protocols::frags Namespace Reference

Classes
class	RMSVallData
class	TorsionFragment
	a class for single piece of torsion fragment More...
class	SingleResidueTorsionFragmentLibrary
	a class for collection of fragments for a single residue position More...
class	TorsionFragmentLibrary
	a class for classic Rosetta fragment library More...
class	VallData

Typedefs
typedef utility::pointer::owning_ptr < TorsionFragmentLibrary >	TorsionFragmentLibraryOP
typedef utility::pointer::owning_ptr < TorsionFragmentLibrary const >	TorsionFragmentLibraryCOP
typedef utility::pointer::owning_ptr < TorsionFragment >	TorsionFragmentOP
typedef utility::pointer::owning_ptr < SingleResidueTorsionFragmentLibrary >	SingleResidueTorsionFragmentLibraryOP

Functions
void	heap_init (FArray1A_int heap, FArray1A_float coheap, int max_items)
	sets up an empty heap and stores the dimensioned size More...
void	heap_extract (FArray1A_int heap, FArray1A_float coheap, int &val, float &coval, bool &err)
	modifes heap and last_val return val and err. More...
void	heap_insert (FArray1A_int heap, FArray1A_float coheap, int val, float coval, bool &err)
	modifes heap and last_dummy, inserts val, returns err requires heap_max to be previously set via heap_init More...
void	heap_replace (FArray1A_int heap, FArray1A_float coheap, int val, float coval)
void	heap_down (FArray1A_int heap, FArray1A_float coheap, int index_in)
void	heap_up (FArray1A_int heap, FArray1A_float coheap, int &index_in)
void	heap_init (ObjexxFCL::FArray1A_int heap, ObjexxFCL::FArray1A_float coheap, int max_items)
void	heap_extract (ObjexxFCL::FArray1A_int heap, ObjexxFCL::FArray1A_float coheap, int &val, float &coval, bool &err)
void	heap_insert (ObjexxFCL::FArray1A_int heap, ObjexxFCL::FArray1A_float coheap, int val, float coval, bool &err)
void	heap_replace (ObjexxFCL::FArray1A_int heap, ObjexxFCL::FArray1A_float coheap, int val, float coval)
void	heap_down (ObjexxFCL::FArray1A_int heap, ObjexxFCL::FArray1A_float coheap, int index_in)
void	heap_up (ObjexxFCL::FArray1A_int heap, ObjexxFCL::FArray1A_float coheap, int &index_in)

Typedef Documentation

typedef utility::pointer::owning_ptr< SingleResidueTorsionFragmentLibrary > protocols::frags::SingleResidueTorsionFragmentLibraryOP

Definition at line 172 of file TorsionFragment.hh.

typedef utility::pointer::owning_ptr< TorsionFragmentLibrary const > protocols::frags::TorsionFragmentLibraryCOP

Definition at line 32 of file TorsionFragment.fwd.hh.

typedef utility::pointer::owning_ptr< TorsionFragmentLibrary > protocols::frags::TorsionFragmentLibraryOP

Definition at line 30 of file TorsionFragment.fwd.hh.

typedef utility::pointer::owning_ptr< TorsionFragment > protocols::frags::TorsionFragmentOP

Definition at line 121 of file TorsionFragment.hh.

Function Documentation

void protocols::frags::heap_down	(	ObjexxFCL::FArray1A_int	heap,
		ObjexxFCL::FArray1A_float	coheap,
		int	index_in
	)

void protocols::frags::heap_down	(	FArray1A_int	heap,
		FArray1A_float	coheap,
		int	index_in
	)

heap_down

Detailed:

Parameters

heap	- [in/out]? - convert to zero offset matrix
coheap	- [in/out]? -
index_in	- [in/out]? -

Global Read:

Global Write:

Remarks

References:

Authors

Last Modified:

Definition at line 285 of file heap.cc.

Referenced by heap_extract(), and heap_replace().

void protocols::frags::heap_extract	(	ObjexxFCL::FArray1A_int	heap,
		ObjexxFCL::FArray1A_float	coheap,
		int &	val,
		float &	coval,
		bool &	err
	)

void protocols::frags::heap_extract	(	FArray1A_int	heap,
		FArray1A_float	coheap,
		int &	val,
		float &	coval,
		bool &	err
	)

modifes heap and last_val return val and err.

heap_extract

Detailed:

Parameters

heap	- [in/out]? - convert to zero offset matrix
coheap	- [in/out]? -
val	- [in/out]? -
coval	- [in/out]? -
err	- [in/out]? -

Global Read:

Global Write:

Remarks

References:

Authors

Last Modified:

Definition at line 127 of file heap.cc.

References heap_down().

Referenced by protocols::frags::VallData::get_frags(), and protocols::frags::RMSVallData::get_frags().

void protocols::frags::heap_init	(	ObjexxFCL::FArray1A_int	heap,
		ObjexxFCL::FArray1A_float	coheap,
		int	max_items
	)

void protocols::frags::heap_init	(	FArray1A_int	heap,
		FArray1A_float	coheap,
		int	max_items
	)

sets up an empty heap and stores the dimensioned size

heap_init

Detailed:

Parameters

heap	- [in/out]? -
coheap	- [in/out]? -
max_items	- [in/out]? -

Global Read:

Global Write:

Remarks

References:

Authors

Last Modified:

Definition at line 86 of file heap.cc.

Referenced by protocols::frags::VallData::get_frags(), and protocols::frags::RMSVallData::get_frags().

void protocols::frags::heap_insert	(	ObjexxFCL::FArray1A_int	heap,
		ObjexxFCL::FArray1A_float	coheap,
		int	val,
		float	coval,
		bool &	err
	)

void protocols::frags::heap_insert	(	FArray1A_int	heap,
		FArray1A_float	coheap,
		int	val,
		float	coval,
		bool &	err
	)

modifes heap and last_dummy, inserts val, returns err requires heap_max to be previously set via heap_init

heap_insert

Detailed:

Parameters

heap	- [in/out]? - convert to zero offset matrix
coheap	- [in/out]? -
val	- [in/out]? -
coval	- [in/out]? -
err	- [in/out]? -

Global Read:

Global Write:

Remarks

References:

Authors

Last Modified:

Definition at line 190 of file heap.cc.

References heap_replace(), and heap_up().

Referenced by protocols::frags::VallData::get_frags(), and protocols::frags::RMSVallData::get_frags().

void protocols::frags::heap_replace	(	ObjexxFCL::FArray1A_int	heap,
		ObjexxFCL::FArray1A_float	coheap,
		int	val,
		float	coval
	)

void protocols::frags::heap_replace	(	FArray1A_int	heap,
		FArray1A_float	coheap,
		int	val,
		float	coval
	)

heap_replace

Detailed:

Parameters

heap	- [in/out]? - convert to zero offset matrix
coheap	- [in/out]? -
val	- [in/out]? -
coval	- [in/out]? -

Global Read:

Global Write:

Remarks

References:

Authors

Last Modified:

Definition at line 241 of file heap.cc.

References heap_down().

Referenced by heap_insert().

void protocols::frags::heap_up	(	ObjexxFCL::FArray1A_int	heap,
		ObjexxFCL::FArray1A_float	coheap,
		int &	index_in
	)

void protocols::frags::heap_up	(	FArray1A_int	heap,
		FArray1A_float	coheap,
		int &	index_in
	)

heap_up

Detailed:

Parameters

heap	- [in/out]? - convert to zero offset matrix
coheap	- [in/out]? -
index_in	- [in/out]? -

Global Read:

Global Write:

Remarks

References:

Authors

Last Modified:

Definition at line 360 of file heap.cc.

Referenced by heap_insert().