StepWiseProteinUtil.cc File Reference

#include <protocols/swa/protein/StepWiseProteinUtil.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/FrameList.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/types.hh>
#include <core/io/silent/BinaryProteinSilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileData.fwd.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/rms_util.hh>
#include <numeric/angle.functions.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/conversions.hh>
#include <string>
#include <utility/vector1.hh>

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Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::swa
	protocols::swa::protein

Constant Groups
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::swa
	protocols::swa::protein

Functions
Real	protocols::swa::protein::get_rotamer_angle (core::Size const &i, core::Size const &N_SAMPLE)
void	protocols::swa::protein::output_silent_struct (core::pose::Pose const &pose, core::pose::PoseCOP const &native_pose_op, std::string const &silent_file, std::string const &tag, core::io::silent::SilentFileDataOP sfd_in)
void	protocols::swa::protein::output_silent_struct (core::pose::Pose const &pose, core::pose::PoseCOP const &native_pose_op, std::string const &silent_file, std::string const &tag, core::io::silent::SilentFileDataOP sfd_in, utility::vector1< core::Size > const &calc_rms_res)
void	protocols::swa::protein::remove_end_variants (core::pose::Pose &pose)
Real	protocols::swa::protein::get_pretend_psi_explicit (core::pose::Pose const &pose, Size const &res)
Real	protocols::swa::protein::get_pretend_phi_explicit (core::pose::Pose const &pose, Size const &res)
void	protocols::swa::protein::setup_protein_CA_atom_id_map (core::pose::Pose const &pose_1, core::pose::Pose const &pose_2, Size const base_res, core::id::AtomID_Map< core::id::AtomID > &atom_ID_map)
void	protocols::swa::protein::setup_protein_backbone_atom_id_map (core::pose::Pose const &pose_1, core::pose::Pose const &pose_2, Size const base_res, core::id::AtomID_Map< core::id::AtomID > &atom_ID_map)
void	protocols::swa::protein::setup_protein_backbone_atom_id_map (core::pose::Pose const &pose_1, core::pose::Pose const &pose_2, Size const base_res, Size const base_res2, core::id::AtomID_Map< core::id::AtomID > &atom_ID_map)
void	protocols::swa::protein::fragment_set_slice (core::fragment::ConstantLengthFragSetOP &fragset, utility::vector1< core::Size > const &slice_res)