core::import_pose::pose_stream::LazySilentFilePoseInputStream Class Reference

#include <LazySilentFilePoseInputStream.hh>

Inheritance diagram for core::import_pose::pose_stream::LazySilentFilePoseInputStream:

Collaboration diagram for core::import_pose::pose_stream::LazySilentFilePoseInputStream:

Public Member Functions
	LazySilentFilePoseInputStream (utility::vector1< FileName > fns)
	LazySilentFilePoseInputStream ()
	~LazySilentFilePoseInputStream ()
utility::vector1< FileName > const &	filenames () const
virtual bool	has_another_pose ()
virtual void	fill_pose (core::pose::Pose &pose, core::chemical::ResidueTypeSet const &residue_set)
virtual void	fill_pose (core::pose::Pose &)
virtual void	reset ()
Public Member Functions inherited from core::import_pose::pose_stream::PoseInputStream
	PoseInputStream ()
virtual	~PoseInputStream ()
virtual utility::vector1 < core::pose::Pose >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)
void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Private Types
typedef std::string	string
typedef utility::file::FileName	FileName

Private Attributes
utility::vector1< FileName >	filenames_
utility::vector1< FileName > ::const_iterator	current_filename_
core::io::silent::SilentFileData	sfd_
core::io::silent::SilentFileData::iterator	current_struct_

Detailed Description

Definition at line 37 of file LazySilentFilePoseInputStream.hh.

Member Typedef Documentation

typedef utility::file::FileName core::import_pose::pose_stream::LazySilentFilePoseInputStream::FileName

private

Definition at line 39 of file LazySilentFilePoseInputStream.hh.

typedef std::string core::import_pose::pose_stream::LazySilentFilePoseInputStream::string

private

Definition at line 38 of file LazySilentFilePoseInputStream.hh.

Constructor & Destructor Documentation

core::import_pose::pose_stream::LazySilentFilePoseInputStream::LazySilentFilePoseInputStream ( utility::vector1< FileName >  fns)

inline

Definition at line 42 of file LazySilentFilePoseInputStream.hh.

References core::io::silent::SilentFileData::begin(), current_filename_, current_struct_, filenames_, core::io::silent::SilentFileData::read_file(), and sfd_.

core::import_pose::pose_stream::LazySilentFilePoseInputStream::LazySilentFilePoseInputStream ( )

inline

Definition at line 50 of file LazySilentFilePoseInputStream.hh.

References reset().

core::import_pose::pose_stream::LazySilentFilePoseInputStream::~LazySilentFilePoseInputStream ( )

inline

Definition at line 53 of file LazySilentFilePoseInputStream.hh.

Member Function Documentation

utility::vector1< FileName > const & core::import_pose::pose_stream::LazySilentFilePoseInputStream::filenames

(

)

const

Definition at line 161 of file LazySilentFilePoseInputStream.cc.

References filenames_.

void core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose ( core::pose::Pose &  pose, core::chemical::ResidueTypeSet const &  residue_set  )

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

Definition at line 64 of file LazySilentFilePoseInputStream.cc.

References core::io::silent::SilentFileData::begin(), core::io::silent::SilentFileData::clear(), current_filename_, current_struct_, core::pose::Pose::data(), core::pack::interaction_graph::debug, core::io::silent::SilentFileData::end(), filenames_, has_another_pose(), core::pose::datacache::CacheableDataType::JOBDIST_OUTPUT_TAG, core::import_pose::pose_stream::PoseInputStream::preprocess_pose(), core::io::silent::SilentFileData::read_file(), core::pose::setPoseExtraScores(), sfd_, and core::import_pose::pose_stream::tr().

void core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose ( core::pose::Pose &  pose)

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

Definition at line 110 of file LazySilentFilePoseInputStream.cc.

References core::io::silent::SilentFileData::begin(), core::io::silent::SilentFileData::clear(), current_filename_, current_struct_, core::pose::Pose::data(), core::pack::interaction_graph::debug, core::io::silent::SilentFileData::end(), filenames_, has_another_pose(), core::pose::datacache::CacheableDataType::JOBDIST_OUTPUT_TAG, core::import_pose::pose_stream::PoseInputStream::preprocess_pose(), core::io::silent::SilentFileData::read_file(), core::pose::setPoseExtraScores(), sfd_, and core::import_pose::pose_stream::tr().

bool core::import_pose::pose_stream::LazySilentFilePoseInputStream::has_another_pose ( )

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

Definition at line 56 of file LazySilentFilePoseInputStream.cc.

References current_filename_, current_struct_, core::io::silent::SilentFileData::end(), filenames_, and sfd_.

Referenced by fill_pose().

void core::import_pose::pose_stream::LazySilentFilePoseInputStream::reset ( )

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

Definition at line 155 of file LazySilentFilePoseInputStream.cc.

References current_filename_, current_struct_, core::io::silent::SilentFileData::end(), filenames_, and sfd_.

Referenced by LazySilentFilePoseInputStream().

Member Data Documentation

utility::vector1< FileName >::const_iterator core::import_pose::pose_stream::LazySilentFilePoseInputStream::current_filename_

private

Definition at line 70 of file LazySilentFilePoseInputStream.hh.

Referenced by fill_pose(), has_another_pose(), LazySilentFilePoseInputStream(), and reset().

core::io::silent::SilentFileData::iterator core::import_pose::pose_stream::LazySilentFilePoseInputStream::current_struct_

private

Definition at line 73 of file LazySilentFilePoseInputStream.hh.

Referenced by fill_pose(), has_another_pose(), LazySilentFilePoseInputStream(), and reset().

utility::vector1< FileName > core::import_pose::pose_stream::LazySilentFilePoseInputStream::filenames_

private

Definition at line 69 of file LazySilentFilePoseInputStream.hh.

Referenced by filenames(), fill_pose(), has_another_pose(), LazySilentFilePoseInputStream(), and reset().

core::io::silent::SilentFileData core::import_pose::pose_stream::LazySilentFilePoseInputStream::sfd_

private

Definition at line 72 of file LazySilentFilePoseInputStream.hh.

Referenced by fill_pose(), has_another_pose(), LazySilentFilePoseInputStream(), and reset().

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The documentation for this class was generated from the following files:

• src/core/import_pose/pose_stream/LazySilentFilePoseInputStream.hh
• src/core/import_pose/pose_stream/LazySilentFilePoseInputStream.cc