| apply(core::pose::Pose &pose_to_visualize) | protocols::swa::protein::StepWiseProteinResidueSampler | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| apply_regular_packer(core::pose::Pose &pose) | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| calc_rms_res_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| do_prepack_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| figure_out_neighbors(core::pose::Pose &pose, utility::vector1< bool > &residues_allowed_to_be_packed) | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::swa::protein::StepWiseProteinResidueSampler | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| green_packer_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_for_regular_packer(core::pose::Pose &pose) | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| initialize_green_packer(core::Size const &nres) | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| initialize_moving_residues_including_junction(Size const &nres) | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| jumps_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| main_chain_torsion_set_lists_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| moving_residues_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(Mover const &other) | protocols::moves::Mover | |
| pack_at_neighbors_only_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| pack_task_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| pose_prepack_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| PoseCOP typedef | protocols::moves::Mover | |
| quick_output(core::pose::Pose &pose, std::string const &tag) | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reinstate_side_chain_angles(core::pose::Pose &pose, core::pose::Pose const &src_pose) | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| reset_status() | protocols::moves::Mover | |
| sample_residues(core::pose::Pose &pose) | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| set_calc_rms_res(utility::vector1< core::Size > const &calc_rms_res) | protocols::swa::protein::StepWiseProteinResidueSampler | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_do_prepack(bool const &setting) | protocols::swa::protein::StepWiseProteinResidueSampler | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_scorefxn(core::scoring::ScoreFunctionOP const &scorefxn) | protocols::swa::protein::StepWiseProteinResidueSampler | |
| set_silent_file(std::string const &setting) | protocols::swa::protein::StepWiseProteinResidueSampler | |
| set_use_green_packer(bool const &setting) | protocols::swa::protein::StepWiseProteinResidueSampler | |
| set_use_packer_instead_of_rotamer_trials(bool const &setting) | protocols::swa::protein::StepWiseProteinResidueSampler | |
| sfd_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| silent_file_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| silent_file_data() | protocols::swa::protein::StepWiseProteinResidueSampler | |
| StepWiseProteinResidueSampler(utility::vector1< Size > const &moving_residues, utility::vector1< core::id::TorsionID > const &which_torsions, utility::vector1< utility::vector1< core::Real > > const &main_chain_torsion_set_lists) | protocols::swa::protein::StepWiseProteinResidueSampler | |
| StepWiseProteinResidueSampler(utility::vector1< Size > const &moving_residues, utility::vector1< core::id::TorsionID > const &which_torsions, utility::vector1< utility::vector1< core::Real > > const &main_chain_torsion_set_lists, Size const which_jump, utility::vector1< core::kinematics::Jump > const &jumps) | protocols::swa::protein::StepWiseProteinResidueSampler | |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| use_green_packer_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| use_packer_instead_of_rotamer_trials_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| which_jump_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| which_torsions_ | protocols::swa::protein::StepWiseProteinResidueSampler | private |
| ~Mover() | protocols::moves::Mover | virtual |
| ~StepWiseProteinResidueSampler() | protocols::swa::protein::StepWiseProteinResidueSampler | |
1.8.4