protocols::vip Namespace Reference

Classes
class	VIP_Mover
class	VIP_Report

Functions
static basic::Tracer	TR ("VIP")
bool	are_seqs_different (core::pose::Pose &p1, core::pose::Pose &p2)
std::string	base_name (const std::string &str)
std::string	get_out_tag (std::string fname)
core::Real	output_packstat (core::pose::Pose &pose)
void	set_local_movemap (core::pose::Pose &pose, core::Size position, core::kinematics::MoveMapOP mmap)

Function Documentation

bool protocols::vip::are_seqs_different	(	core::pose::Pose &	p1,
		core::pose::Pose &	p2
	)

Definition at line 483 of file VIP_Mover.cc.

References core::conformation::Residue::name(), core::pose::Pose::residue(), and core::pose::Pose::total_residue().

std::string protocols::vip::base_name

(

const std::string &

str)

Definition at line 28 of file VIP_Utils.cc.

References core::sequence::end.

Referenced by protocols::jd2::JobOutputter::affixed_numbered_name(), protocols::simple_moves::chiral::get_chiral_residue_type(), get_out_tag(), core::chemical::ResidueTypeSet::get_residue_type_with_variant_added(), core::chemical::ResidueTypeSet::get_residue_type_with_variant_removed(), protocols::simple_moves::chiral::is_d_chiral(), protocols::simple_moves::chiral::is_l_chiral(), and protocols::toolbox::match_enzdes_util::EnzConstraintParameters::make_constraint_covalent_helper().

std::string protocols::vip::get_out_tag

(

std::string

fname)

Definition at line 36 of file VIP_Utils.cc.

References base_name().

core::Real protocols::vip::output_packstat

(

core::pose::Pose &

pose)

Definition at line 44 of file VIP_Utils.cc.

Referenced by protocols::vip::VIP_Report::get_GOE_packstat_report().

void protocols::vip::set_local_movemap	(	core::pose::Pose &	pose,
		core::Size	position,
		core::kinematics::MoveMapOP	mmap
	)

Definition at line 113 of file VIP_Utils.cc.

References core::graph::Node::const_upper_edge_list_end(), core::pose::Pose::energies(), core::scoring::Energies::energy_graph(), and core::graph::Edge::get_node().

Referenced by protocols::vip::VIP_Mover::relax_favorable_poses().

static basic::Tracer protocols::vip::TR ( "VIP"  )

static