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core::pack::dunbrack::RotamerLibrary Member List

This is the complete list of members for core::pack::dunbrack::RotamerLibrary, including all inherited members.

AA typedefcore::pack::dunbrack::RotamerLibrary
aa_libraries_core::pack::dunbrack::RotamerLibrarymutableprivate
add_residue_library(AA const &aa, SingleResidueRotamerLibraryCOP rot_lib) const core::pack::dunbrack::RotamerLibrary
add_residue_library(ResidueType const &rsd_type, SingleResidueRotamerLibraryCOP rot_lib) const core::pack::dunbrack::RotamerLibrary
best_rotamer_energy(Residue const &rsd, bool curr_rotamer_only, RotamerLibraryScratchSpace &scratch) const core::pack::dunbrack::RotamerLibrary
binary_is_up_to_date(utility::io::izstream &binlib) const core::pack::dunbrack::RotamerLibraryprivate
binary_is_up_to_date_02(utility::io::izstream &binlib) const core::pack::dunbrack::RotamerLibraryprivate
binary_is_up_to_date_10(utility::io::izstream &binlib) const core::pack::dunbrack::RotamerLibraryprivate
create_fa_dunbrack_libraries()core::pack::dunbrack::RotamerLibrary
create_fa_dunbrack_libraries_02_from_ASCII()core::pack::dunbrack::RotamerLibraryprivate
create_fa_dunbrack_libraries_02_from_binary()core::pack::dunbrack::RotamerLibraryprivate
create_fa_dunbrack_libraries_10_from_ASCII()core::pack::dunbrack::RotamerLibraryprivate
create_fa_dunbrack_libraries_10_from_binary()core::pack::dunbrack::RotamerLibraryprivate
create_fa_dunbrack_libraries_from_ASCII()core::pack::dunbrack::RotamerLibraryprivate
create_fa_dunbrack_libraries_from_binary()core::pack::dunbrack::RotamerLibraryprivate
create_rotameric_dunlib(chemical::AA aa, Size const n_chi, utility::io::izstream &library, bool dun02, std::string &next_aa_in_library, bool first_three_letter_code_already_read) const core::pack::dunbrack::RotamerLibraryprivate
create_rotameric_dunlib(chemical::AA aa, Size const n_chi, bool dun02) const core::pack::dunbrack::RotamerLibraryprivate
create_semi_rotameric_dunlib(chemical::AA aa, Size const nchi, bool const use_bbind_rnchi_scoring, bool const use_bbind_rnchi_sampling, bool const nrchi_is_symmetric, Real const nrchi_start_angle, utility::io::izstream &rotamer_definitions, utility::io::izstream &regular_library, utility::io::izstream &continuous_minimization_bbdep) const core::pack::dunbrack::RotamerLibraryprivate
create_semi_rotameric_dunlib(chemical::AA aa, Size const nchi, bool const use_bbind_rnchi_scoring, bool const use_bbind_rnchi_sampling, bool const nrchi_is_symmetric, Real const nrchi_start_angle) const core::pack::dunbrack::RotamerLibraryprivate
create_srdl(chemical::AA aa_in) const core::pack::dunbrack::RotamerLibraryprivate
current_binary_format_version_id_02() const core::pack::dunbrack::RotamerLibraryprivate
current_binary_format_version_id_10() const core::pack::dunbrack::RotamerLibraryprivate
decide_read_from_binary() const core::pack::dunbrack::RotamerLibraryprivate
decide_read_from_binary_02() const core::pack::dunbrack::RotamerLibraryprivate
decide_read_from_binary_10() const core::pack::dunbrack::RotamerLibraryprivate
decide_write_binary() const core::pack::dunbrack::RotamerLibraryprivate
decide_write_binary_02() const core::pack::dunbrack::RotamerLibraryprivate
decide_write_binary_10() const core::pack::dunbrack::RotamerLibraryprivate
get_binary_name() const core::pack::dunbrack::RotamerLibraryprivate
get_binary_name_02() const core::pack::dunbrack::RotamerLibraryprivate
get_binary_name_10() const core::pack::dunbrack::RotamerLibraryprivate
get_instance()core::pack::dunbrack::RotamerLibrarystatic
get_library_by_aa(chemical::AA const &aa) const core::pack::dunbrack::RotamerLibrary
get_library_name_02() const core::pack::dunbrack::RotamerLibraryprivate
get_NCAARotamerLibrary(chemical::ResidueType const &rsd_type) const core::pack::dunbrack::RotamerLibrary
get_rsd_library(chemical::ResidueType const &rsd_type) const core::pack::dunbrack::RotamerLibrary
initialize_and_read_srsrdl(SemiRotamericSingleResidueDunbrackLibrary< T > &srsrdl, bool const nrchi_is_symmetric, Real const nrchi_start_angle, utility::io::izstream &rotamer_definitions, utility::io::izstream &regular_library, utility::io::izstream &continuous_minimization_bbdep) const core::pack::dunbrack::RotamerLibraryprivate
initialize_dun02_aa_parameters(utility::vector1< chemical::AA > &rotameric_amino_acids, utility::vector1< Size > &rotameric_n_chi)core::pack::dunbrack::RotamerLibrarystatic
initialize_dun02_aa_parameters(utility::vector1< Size > &nchi_for_aa, Size &n_rotameric_aas)core::pack::dunbrack::RotamerLibrarystatic
initialize_dun10_aa_parameters(utility::vector1< chemical::AA > &rotameric_amino_acids, utility::vector1< Size > &rotameric_n_chi, utility::vector1< chemical::AA > &sraa, utility::vector1< Size > &srnchi, utility::vector1< bool > &scind, utility::vector1< bool > &sampind, utility::vector1< bool > &sym, utility::vector1< Real > &astr)core::pack::dunbrack::RotamerLibrarystatic
initialize_srsrdl(SemiRotamericSingleResidueDunbrackLibrary< T > &srsrdl, bool const nrchi_is_symmetric, Real const nrchi_start_angle) const core::pack::dunbrack::RotamerLibraryprivate
libraries_core::pack::dunbrack::RotamerLibrarymutableprivate
libraries_ops_core::pack::dunbrack::RotamerLibrarymutableprivate
library_iterator typedefcore::pack::dunbrack::RotamerLibraryprivate
LibraryMap typedefcore::pack::dunbrack::RotamerLibraryprivate
ncaa_rotlibs_core::pack::dunbrack::RotamerLibrarymutableprivate
operator=(RotamerLibrary const &)core::pack::dunbrack::RotamerLibraryprivate
random_tempname(std::string const &prefix) const core::pack::dunbrack::RotamerLibraryprivate
read_from_binary(utility::io::izstream &in)core::pack::dunbrack::RotamerLibraryprivate
Residue typedefcore::pack::dunbrack::RotamerLibrary
ResidueType typedefcore::pack::dunbrack::RotamerLibrary
reslibraries_core::pack::dunbrack::RotamerLibrarymutableprivate
reslibrary_iterator typedefcore::pack::dunbrack::RotamerLibraryprivate
ResLibraryMap typedefcore::pack::dunbrack::RotamerLibraryprivate
rotamer_energy(Residue const &rsd, RotamerLibraryScratchSpace &scratch) const core::pack::dunbrack::RotamerLibrary
rotamer_energy_deriv(Residue const &rsd, RotamerLibraryScratchSpace &scratch) const core::pack::dunbrack::RotamerLibrary
rotamer_library_core::pack::dunbrack::RotamerLibraryprivatestatic
RotamerLibrary()core::pack::dunbrack::RotamerLibraryprivate
RotamerLibrary(RotamerLibrary const &)core::pack::dunbrack::RotamerLibraryprivate
rsd_library_already_loaded(chemical::ResidueType const &rsd_type) const core::pack::dunbrack::RotamerLibrary
write_binary_fa_dunbrack_libraries() const core::pack::dunbrack::RotamerLibraryprivate
write_binary_fa_dunbrack_libraries_02() const core::pack::dunbrack::RotamerLibraryprivate
write_binary_fa_dunbrack_libraries_10() const core::pack::dunbrack::RotamerLibraryprivate
write_to_binary(utility::io::ozstream &out) const core::pack::dunbrack::RotamerLibraryprivate
write_to_file(std::string filename) const core::pack::dunbrack::RotamerLibrary
~RotamerLibrary()core::pack::dunbrack::RotamerLibraryvirtual
Generated on Sat Jun 1 2013 12:27:00 for Rosetta 3.5 by   doxygen 1.8.4