protocols::enzdes::SetCatalyticResPackBehavior Class Reference

queries the pose cst cache for the catalytic residues, and sets the behavior for them as specified in the cstfile More...

#include <EnzdesTaskOperations.hh>

Inheritance diagram for protocols::enzdes::SetCatalyticResPackBehavior:

Collaboration diagram for protocols::enzdes::SetCatalyticResPackBehavior:

Public Types
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef core::pose::Pose	Pose
typedef core::pack::task::PackerTask	PackerTask
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr
typedef pose::Pose	Pose

Public Member Functions
	SetCatalyticResPackBehavior ()
	~SetCatalyticResPackBehavior ()
virtual TaskOperationOP	clone () const
	Create another task operation of the type matching the most-derived version of the class. More...
virtual void	apply (Pose const &pose, PackerTask &task) const
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
virtual void	parse_tag (TagPtr tag)
	Used to parse an xml-like tag to load parameters and properties. More...
void	set_fix_catalytic_aa (bool setting)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()
virtual void	parse_def (utility::lua::LuaObject const &def)

Private Attributes
bool	fix_catalytic_aa_
std::string	behavior_non_catalytic_

Detailed Description

queries the pose cst cache for the catalytic residues, and sets the behavior for them as specified in the cstfile

Definition at line 37 of file EnzdesTaskOperations.hh.

Member Typedef Documentation

typedef core::pack::task::PackerTask protocols::enzdes::SetCatalyticResPackBehavior::PackerTask

Definition at line 43 of file EnzdesTaskOperations.hh.

typedef core::pose::Pose protocols::enzdes::SetCatalyticResPackBehavior::Pose

Definition at line 42 of file EnzdesTaskOperations.hh.

typedef core::pack::task::operation::TaskOperationOP protocols::enzdes::SetCatalyticResPackBehavior::TaskOperationOP

Definition at line 41 of file EnzdesTaskOperations.hh.

Constructor & Destructor Documentation

protocols::enzdes::SetCatalyticResPackBehavior::SetCatalyticResPackBehavior

(

)

Definition at line 81 of file EnzdesTaskOperations.cc.

Referenced by clone().

protocols::enzdes::SetCatalyticResPackBehavior::~SetCatalyticResPackBehavior

(

)

Definition at line 86 of file EnzdesTaskOperations.cc.

Member Function Documentation

void protocols::enzdes::SetCatalyticResPackBehavior::apply ( Pose const &  pose, PackerTask &  task  ) const

virtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

Definition at line 98 of file EnzdesTaskOperations.cc.

References core::chemical::aa_from_name(), behavior_non_catalytic_, core::pack::task::create_command_map(), fix_catalytic_aa_, protocols::toolbox::match_enzdes_util::get_enzdes_observer(), core::chemical::ResidueType::is_protein(), core::chemical::ResidueType::nchi(), core::pack::task::PackerTask::nonconst_residue_task(), core::chemical::num_canonical_aas, core::pack::task::ResidueLevelTask::or_ex1(), core::pack::task::ResidueLevelTask::or_ex1_sample_level(), core::pack::task::ResidueLevelTask::or_ex2(), core::pack::task::ResidueLevelTask::or_ex2_sample_level(), core::pack::task::ResidueLevelTask::or_ex3(), core::pack::task::ResidueLevelTask::or_ex3_sample_level(), core::pack::task::ResidueLevelTask::or_ex4(), core::pack::task::ResidueLevelTask::or_ex4_sample_level(), core::pack::task::ResidueLevelTask::prevent_repacking(), core::pose::Pose::residue_type(), core::pack::task::ResidueLevelTask::restrict_absent_canonical_aas(), core::pack::task::ResidueLevelTask::restrict_to_repacking(), core::pose::Pose::total_residue(), and protocols::enzdes::tr().

core::pack::task::operation::TaskOperationOP protocols::enzdes::SetCatalyticResPackBehavior::clone ( ) const

virtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

Definition at line 89 of file EnzdesTaskOperations.cc.

References behavior_non_catalytic_, fix_catalytic_aa_, and SetCatalyticResPackBehavior().

void protocols::enzdes::SetCatalyticResPackBehavior::parse_tag ( TagPtr  tag)

virtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

Definition at line 172 of file EnzdesTaskOperations.cc.

References behavior_non_catalytic_, and fix_catalytic_aa_.

void protocols::enzdes::SetCatalyticResPackBehavior::set_fix_catalytic_aa ( bool  setting)

inline

Definition at line 59 of file EnzdesTaskOperations.hh.

References fix_catalytic_aa_.

Member Data Documentation

std::string protocols::enzdes::SetCatalyticResPackBehavior::behavior_non_catalytic_

private

Definition at line 64 of file EnzdesTaskOperations.hh.

Referenced by apply(), clone(), and parse_tag().

bool protocols::enzdes::SetCatalyticResPackBehavior::fix_catalytic_aa_

private

Definition at line 63 of file EnzdesTaskOperations.hh.

Referenced by apply(), clone(), parse_tag(), and set_fix_catalytic_aa().

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The documentation for this class was generated from the following files:

• src/protocols/enzdes/EnzdesTaskOperations.hh
• src/protocols/enzdes/EnzdesTaskOperations.cc