#include <NonSequentialNeighborsFilter.hh>

Inheritance diagram for protocols::simple_filters::NonSequentialNeighborsFilter:

Collaboration diagram for protocols::simple_filters::NonSequentialNeighborsFilter:

Public Member Functions
	NonSequentialNeighborsFilter ()

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

filters::FilterOP	clone () const

filters::FilterOP	fresh_instance () const

void	report (std::ostream &out, core::pose::Pose const &pose) const

core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

virtual	~NonSequentialNeighborsFilter ()

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

core::Real	distance_threshold () const

void	distance_threshold (core::Real const r)

core::Size	neighbor_cutoff () const

void	neighbor_cutoff (core::Size const n)

bool	bound () const

void	bound (bool const b)

core::Size	resnum () const

void	resnum (core::Size const s)

void	jump (core::Size const j)

core::Size	jump () const

core::Size	residue_neighbors (core::pose::Pose const &pose, core::Size const resi) const

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
core::Real	distance_threshold_

core::Size	neighbor_cutoff_

bool	bound_

core::Size	resnum_

core::Size	jump_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 30 of file NonSequentialNeighborsFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::NonSequentialNeighborsFilter::NonSequentialNeighborsFilter ( )

Definition at line 37 of file NonSequentialNeighborsFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::NonSequentialNeighborsFilter::~NonSequentialNeighborsFilter ( )

virtual

Definition at line 47 of file NonSequentialNeighborsFilter.cc.

Member Function Documentation

bool protocols::simple_filters::NonSequentialNeighborsFilter::apply ( core::pose::Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 62 of file NonSequentialNeighborsFilter.cc.

References compute().

bool protocols::simple_filters::NonSequentialNeighborsFilter::bound ( ) const

inline

Definition at line 53 of file NonSequentialNeighborsFilter.hh.

References bound_.

Referenced by compute(), protocols::toolbox::task_operations::ProteinCore::operator()(), and parse_my_tag().

void protocols::simple_filters::NonSequentialNeighborsFilter::bound ( bool const b)

inline

Definition at line 54 of file NonSequentialNeighborsFilter.hh.

References protocols::match::upstream::b, and bound_.

filters::FilterOP protocols::simple_filters::NonSequentialNeighborsFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 36 of file NonSequentialNeighborsFilter.hh.

References NonSequentialNeighborsFilter().

core::Real protocols::simple_filters::NonSequentialNeighborsFilter::compute ( core::pose::Pose const & pose) const

Definition at line 92 of file NonSequentialNeighborsFilter.cc.

References protocols::rigid::RigidBodyTransMover::apply(), bound(), jump(), residue_neighbors(), resnum(), protocols::rigid::RigidBodyTransMover::step_size(), core::pose::Pose::total_residue(), and protocols::simple_filters::TR().

Referenced by apply(), protocols::toolbox::task_operations::ProteinCore::operator()(), report(), and report_sm().

core::Real protocols::simple_filters::NonSequentialNeighborsFilter::distance_threshold ( ) const

inline

Definition at line 49 of file NonSequentialNeighborsFilter.hh.

References distance_threshold_.

Referenced by protocols::toolbox::task_operations::ProteinCore::operator()(), parse_my_tag(), and residue_neighbors().

void protocols::simple_filters::NonSequentialNeighborsFilter::distance_threshold ( core::Real const r)

inline

Definition at line 50 of file NonSequentialNeighborsFilter.hh.

References distance_threshold_.

filters::FilterOP protocols::simple_filters::NonSequentialNeighborsFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 39 of file NonSequentialNeighborsFilter.hh.

References NonSequentialNeighborsFilter().

void protocols::simple_filters::NonSequentialNeighborsFilter::jump ( core::Size const j)

inline

Definition at line 57 of file NonSequentialNeighborsFilter.hh.

References jump_.

Referenced by protocols::toolbox::task_operations::ProteinCore::operator()().

core::Size protocols::simple_filters::NonSequentialNeighborsFilter::jump ( ) const

inline

Definition at line 58 of file NonSequentialNeighborsFilter.hh.

References jump_.

Referenced by compute(), and parse_my_tag().

core::Size protocols::simple_filters::NonSequentialNeighborsFilter::neighbor_cutoff ( ) const

inline

Definition at line 51 of file NonSequentialNeighborsFilter.hh.

References neighbor_cutoff_.

Referenced by protocols::toolbox::task_operations::ProteinCore::operator()(), parse_my_tag(), and residue_neighbors().

void protocols::simple_filters::NonSequentialNeighborsFilter::neighbor_cutoff ( core::Size const n)

inline

Definition at line 52 of file NonSequentialNeighborsFilter.hh.

References neighbor_cutoff_.

void protocols::simple_filters::NonSequentialNeighborsFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)