protocols::fldsgn::filters::CoreDunbrackFilter Class Reference

#include <CoreDunbrackFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::CoreDunbrackFilter:

Collaboration diagram for protocols::fldsgn::filters::CoreDunbrackFilter:

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef core::Real	Real
typedef core::pose::Pose	Pose
typedef std::string	String
typedef core::scoring::ScoreFunction	ScoreFunction
typedef core::scoring::ScoreFunctionOP	ScoreFunctionOP
typedef utility::tag::TagPtr	TagPtr
typedef protocols::filters::Filters_map	Filters_map
typedef protocols::moves::DataMap	DataMap
typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	CoreDunbrackFilter ()
	CoreDunbrackFilter (String const &type, Real const value)
	CoreDunbrackFilter (CoreDunbrackFilter const &rval)
virtual	~CoreDunbrackFilter ()
virtual FilterOP	clone () const
virtual FilterOP	fresh_instance () const
void	filter_value (Real const &ss)
void	filter_type (String const &ss)
virtual std::string	name () const
virtual void	parse_my_tag (TagPtr const tag, DataMap &, Filters_map const &, Movers_map const &, Pose const &pose)
	parse xml More...
virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
virtual Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual void	report (std::ostream &out, Pose const &pose) const
	used to report score More...
Real	compute (Pose const &pose) const
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
Real	filter_value_
String	type_
Real	fa_dun_danger_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 46 of file CoreDunbrackFilter.hh.

Member Typedef Documentation

typedef protocols::moves::DataMap protocols::fldsgn::filters::CoreDunbrackFilter::DataMap

Definition at line 60 of file CoreDunbrackFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::CoreDunbrackFilter::Filter

Definition at line 50 of file CoreDunbrackFilter.hh.

typedef protocols::filters::FilterOP protocols::fldsgn::filters::CoreDunbrackFilter::FilterOP

Definition at line 51 of file CoreDunbrackFilter.hh.

typedef protocols::filters::Filters_map protocols::fldsgn::filters::CoreDunbrackFilter::Filters_map

Definition at line 59 of file CoreDunbrackFilter.hh.

typedef protocols::moves::Movers_map protocols::fldsgn::filters::CoreDunbrackFilter::Movers_map

Definition at line 61 of file CoreDunbrackFilter.hh.

typedef core::pose::Pose protocols::fldsgn::filters::CoreDunbrackFilter::Pose

Definition at line 53 of file CoreDunbrackFilter.hh.

typedef core::Real protocols::fldsgn::filters::CoreDunbrackFilter::Real

Definition at line 52 of file CoreDunbrackFilter.hh.

typedef core::scoring::ScoreFunction protocols::fldsgn::filters::CoreDunbrackFilter::ScoreFunction

Definition at line 55 of file CoreDunbrackFilter.hh.

typedef core::scoring::ScoreFunctionOP protocols::fldsgn::filters::CoreDunbrackFilter::ScoreFunctionOP

Definition at line 56 of file CoreDunbrackFilter.hh.

typedef std::string protocols::fldsgn::filters::CoreDunbrackFilter::String

Definition at line 54 of file CoreDunbrackFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::CoreDunbrackFilter::Super

Definition at line 49 of file CoreDunbrackFilter.hh.

typedef utility::tag::TagPtr protocols::fldsgn::filters::CoreDunbrackFilter::TagPtr

Definition at line 58 of file CoreDunbrackFilter.hh.

Constructor & Destructor Documentation

protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter

(

)

Definition at line 57 of file CoreDunbrackFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter	(	String const &	type,
		Real const	value
	)

Definition at line 65 of file CoreDunbrackFilter.cc.

protocols::fldsgn::filters::CoreDunbrackFilter::CoreDunbrackFilter

(

CoreDunbrackFilter const &

rval)

Definition at line 73 of file CoreDunbrackFilter.cc.

virtual protocols::fldsgn::filters::CoreDunbrackFilter::~CoreDunbrackFilter ( )

inlinevirtual

Definition at line 76 of file CoreDunbrackFilter.hh.

Member Function Documentation

bool protocols::fldsgn::filters::CoreDunbrackFilter::apply ( Pose const &  pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 185 of file CoreDunbrackFilter.cc.

References compute(), filter_value_, tr(), and type_.

virtual FilterOP protocols::fldsgn::filters::CoreDunbrackFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 83 of file CoreDunbrackFilter.hh.

References CoreDunbrackFilter().

CoreDunbrackFilter::Real protocols::fldsgn::filters::CoreDunbrackFilter::compute

(

Pose const &

pose)

const

Definition at line 109 of file CoreDunbrackFilter.cc.

References core::pose::Pose::aa(), core::scoring::calc_per_atom_sasa(), core::scoring::ScoreFunctionFactory::create_score_function(), core::pose::Pose::energies(), core::scoring::fa_dun, fa_dun_danger_, core::pose::initialize_atomid_map(), core::chemical::name_from_aa(), core::scoring::Energies::residue_total_energies(), core::scoring::SCORE12_PATCH, core::id::AtomID_Map< T >::set(), core::scoring::STANDARD_WTS, core::pose::Pose::total_residue(), tr(), and type_.

Referenced by apply(), report(), and report_sm().

void protocols::fldsgn::filters::CoreDunbrackFilter::filter_type

(

String const &

ss)

Definition at line 88 of file CoreDunbrackFilter.cc.

References type_.

void protocols::fldsgn::filters::CoreDunbrackFilter::filter_value

(

Real const &

ss)

Definition at line 82 of file CoreDunbrackFilter.cc.

References filter_value_.

virtual FilterOP protocols::fldsgn::filters::CoreDunbrackFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 86 of file CoreDunbrackFilter.hh.

References CoreDunbrackFilter().

virtual std::string protocols::fldsgn::filters::CoreDunbrackFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

Definition at line 103 of file CoreDunbrackFilter.hh.

void protocols::fldsgn::filters::CoreDunbrackFilter::parse_my_tag ( TagPtr const  tag, DataMap &  , Filters_map const &  , Movers_map const &  , Pose const &  pose  )

virtual

parse xml

Reimplemented from protocols::filters::Filter.

Definition at line 199 of file CoreDunbrackFilter.cc.

References filter_value_, core::pose::Pose::total_residue(), tr(), and type_.

void protocols::fldsgn::filters::CoreDunbrackFilter::report ( std::ostream &  out, Pose const &  pose  ) const

virtual

used to report score

Reimplemented from protocols::filters::Filter.

Definition at line 102 of file CoreDunbrackFilter.cc.

References compute().

CoreDunbrackFilter::Real protocols::fldsgn::filters::CoreDunbrackFilter::report_sm ( Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

Definition at line 95 of file CoreDunbrackFilter.cc.

References compute().

Member Data Documentation

Real protocols::fldsgn::filters::CoreDunbrackFilter::fa_dun_danger_

private

Definition at line 139 of file CoreDunbrackFilter.hh.

Referenced by compute().

Real protocols::fldsgn::filters::CoreDunbrackFilter::filter_value_

private

Definition at line 135 of file CoreDunbrackFilter.hh.

Referenced by apply(), filter_value(), and parse_my_tag().

String protocols::fldsgn::filters::CoreDunbrackFilter::type_

private

Definition at line 137 of file CoreDunbrackFilter.hh.

Referenced by apply(), compute(), filter_type(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/fldsgn/filters/CoreDunbrackFilter.hh
• src/protocols/fldsgn/filters/CoreDunbrackFilter.cc