core::scoring::DenseEnergyContainer Class Reference

#include <DenseEnergyContainer.hh>

Inheritance diagram for core::scoring::DenseEnergyContainer:

Collaboration diagram for core::scoring::DenseEnergyContainer:

Public Member Functions
virtual	~DenseEnergyContainer ()
virtual LREnergyContainerOP	clone () const
	DenseEnergyContainer (Size const size_in, ScoreType const score_type_in)
virtual bool	empty () const
virtual void	set_num_nodes (Size size_in)
Size	size () const
virtual ResidueNeighborConstIteratorOP	const_neighbor_iterator_begin (int resid) const
virtual ResidueNeighborConstIteratorOP	const_neighbor_iterator_end (int resid) const
virtual ResidueNeighborConstIteratorOP	const_upper_neighbor_iterator_begin (int resid) const
virtual ResidueNeighborConstIteratorOP	const_upper_neighbor_iterator_end (int resid) const
virtual ResidueNeighborIteratorOP	neighbor_iterator_begin (int resid)
virtual ResidueNeighborIteratorOP	neighbor_iterator_end (int resid)
virtual ResidueNeighborIteratorOP	upper_neighbor_iterator_begin (int resid)
virtual ResidueNeighborIteratorOP	upper_neighbor_iterator_end (int resid)
Public Member Functions inherited from core::scoring::LREnergyContainer
virtual	~LREnergyContainer ()

Private Attributes
Size	size_
ScoreType	score_type_
ObjexxFCL::FArray2D< Real >	table_
ObjexxFCL::FArray2D< bool >	computed_

Detailed Description

Definition at line 265 of file DenseEnergyContainer.hh.

Constructor & Destructor Documentation

virtual core::scoring::DenseEnergyContainer::~DenseEnergyContainer ( )

inlinevirtual

Definition at line 269 of file DenseEnergyContainer.hh.

core::scoring::DenseEnergyContainer::DenseEnergyContainer ( Size const  size_in, ScoreType const  score_type_in  )

inline

Definition at line 277 of file DenseEnergyContainer.hh.

Referenced by clone().

Member Function Documentation

virtual LREnergyContainerOP core::scoring::DenseEnergyContainer::clone ( ) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

Definition at line 272 of file DenseEnergyContainer.hh.

References DenseEnergyContainer().

virtual ResidueNeighborConstIteratorOP core::scoring::DenseEnergyContainer::const_neighbor_iterator_begin ( int  resid) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

Definition at line 307 of file DenseEnergyContainer.hh.

References computed_, score_type_, and table_.

virtual ResidueNeighborConstIteratorOP core::scoring::DenseEnergyContainer::const_neighbor_iterator_end ( int  resid) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

Definition at line 314 of file DenseEnergyContainer.hh.

References computed_, score_type_, size_, and table_.

Referenced by const_upper_neighbor_iterator_end().

virtual ResidueNeighborConstIteratorOP core::scoring::DenseEnergyContainer::const_upper_neighbor_iterator_begin ( int  resid) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

Definition at line 321 of file DenseEnergyContainer.hh.

References computed_, score_type_, and table_.

virtual ResidueNeighborConstIteratorOP core::scoring::DenseEnergyContainer::const_upper_neighbor_iterator_end ( int  resid) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

Definition at line 328 of file DenseEnergyContainer.hh.

References const_neighbor_iterator_end().

virtual bool core::scoring::DenseEnergyContainer::empty ( ) const

inlinevirtual

Implements core::scoring::LREnergyContainer.

Definition at line 285 of file DenseEnergyContainer.hh.

References size_.

virtual ResidueNeighborIteratorOP core::scoring::DenseEnergyContainer::neighbor_iterator_begin ( int  resid)

inlinevirtual

Implements core::scoring::LREnergyContainer.

Definition at line 336 of file DenseEnergyContainer.hh.

References computed_, score_type_, and table_.

virtual ResidueNeighborIteratorOP core::scoring::DenseEnergyContainer::neighbor_iterator_end ( int  resid)

inlinevirtual

Implements core::scoring::LREnergyContainer.

Definition at line 343 of file DenseEnergyContainer.hh.

References computed_, score_type_, size_, and table_.

Referenced by upper_neighbor_iterator_end().

virtual void core::scoring::DenseEnergyContainer::set_num_nodes ( Size  size_in)

inlinevirtual

Reimplemented from core::scoring::LREnergyContainer.

Definition at line 292 of file DenseEnergyContainer.hh.

References computed_, size_, and table_.

Size core::scoring::DenseEnergyContainer::size ( ) const

inline

Definition at line 299 of file DenseEnergyContainer.hh.

References size_.

virtual ResidueNeighborIteratorOP core::scoring::DenseEnergyContainer::upper_neighbor_iterator_begin ( int  resid)

inlinevirtual

Implements core::scoring::LREnergyContainer.

Definition at line 350 of file DenseEnergyContainer.hh.

References computed_, score_type_, and table_.

virtual ResidueNeighborIteratorOP core::scoring::DenseEnergyContainer::upper_neighbor_iterator_end ( int  resid)

inlinevirtual

Implements core::scoring::LREnergyContainer.

Definition at line 357 of file DenseEnergyContainer.hh.

References neighbor_iterator_end().

Member Data Documentation

ObjexxFCL::FArray2D< bool > core::scoring::DenseEnergyContainer::computed_

private

Definition at line 367 of file DenseEnergyContainer.hh.

Referenced by const_neighbor_iterator_begin(), const_neighbor_iterator_end(), const_upper_neighbor_iterator_begin(), neighbor_iterator_begin(), neighbor_iterator_end(), set_num_nodes(), and upper_neighbor_iterator_begin().

ScoreType core::scoring::DenseEnergyContainer::score_type_

private

Definition at line 364 of file DenseEnergyContainer.hh.

Referenced by const_neighbor_iterator_begin(), const_neighbor_iterator_end(), const_upper_neighbor_iterator_begin(), neighbor_iterator_begin(), neighbor_iterator_end(), and upper_neighbor_iterator_begin().

Size core::scoring::DenseEnergyContainer::size_

private

Definition at line 363 of file DenseEnergyContainer.hh.

Referenced by const_neighbor_iterator_end(), empty(), neighbor_iterator_end(), set_num_nodes(), and size().

ObjexxFCL::FArray2D< Real > core::scoring::DenseEnergyContainer::table_

private

Definition at line 366 of file DenseEnergyContainer.hh.

Referenced by const_neighbor_iterator_begin(), const_neighbor_iterator_end(), const_upper_neighbor_iterator_begin(), neighbor_iterator_begin(), neighbor_iterator_end(), set_num_nodes(), and upper_neighbor_iterator_begin().

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The documentation for this class was generated from the following file:

• src/core/scoring/DenseEnergyContainer.hh