protocols::rotamer_recovery::RRComparerAutomorphicRMSD Class Reference

#include <RRComparerAutomorphicRMSD.hh>

Inheritance diagram for protocols::rotamer_recovery::RRComparerAutomorphicRMSD:

Collaboration diagram for protocols::rotamer_recovery::RRComparerAutomorphicRMSD:

Public Member Functions
	RRComparerAutomorphicRMSD ()
	~RRComparerAutomorphicRMSD ()
	RRComparerAutomorphicRMSD (RRComparerAutomorphicRMSD const &)
virtual std::string	get_name () const
virtual std::string	get_parameters () const
virtual bool	measure_rotamer_recovery (core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::Real &score, bool &recovered)
virtual void	set_include_backbone_atoms (bool const include_backbone_atoms)
virtual bool	get_include_backbone_atoms () const
virtual void	set_recovery_threshold (core::Real const recovery_threshold)
virtual core::Real	get_recovery_threshold () const
Public Member Functions inherited from protocols::rotamer_recovery::RRComparer
virtual	~RRComparer ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

Private Attributes
bool	include_backbone_atoms_
core::Real	recovery_threshold_

Detailed Description

Definition at line 38 of file RRComparerAutomorphicRMSD.hh.

Constructor & Destructor Documentation

protocols::rotamer_recovery::RRComparerAutomorphicRMSD::RRComparerAutomorphicRMSD

(

)

Definition at line 60 of file RRComparerAutomorphicRMSD.cc.

protocols::rotamer_recovery::RRComparerAutomorphicRMSD::~RRComparerAutomorphicRMSD

(

)

Definition at line 71 of file RRComparerAutomorphicRMSD.cc.

protocols::rotamer_recovery::RRComparerAutomorphicRMSD::RRComparerAutomorphicRMSD

(

RRComparerAutomorphicRMSD const &

src)

Definition at line 65 of file RRComparerAutomorphicRMSD.cc.

Member Function Documentation

bool protocols::rotamer_recovery::RRComparerAutomorphicRMSD::get_include_backbone_atoms ( ) const

virtual

Definition at line 142 of file RRComparerAutomorphicRMSD.cc.

References include_backbone_atoms_.

Referenced by get_parameters(), and measure_rotamer_recovery().

string protocols::rotamer_recovery::RRComparerAutomorphicRMSD::get_name ( ) const

virtual

Implements protocols::rotamer_recovery::RRComparer.

Definition at line 122 of file RRComparerAutomorphicRMSD.cc.

string protocols::rotamer_recovery::RRComparerAutomorphicRMSD::get_parameters ( ) const

virtual

Implements protocols::rotamer_recovery::RRComparer.

Definition at line 127 of file RRComparerAutomorphicRMSD.cc.

References get_include_backbone_atoms(), and get_recovery_threshold().

Real protocols::rotamer_recovery::RRComparerAutomorphicRMSD::get_recovery_threshold ( ) const

virtual

Definition at line 154 of file RRComparerAutomorphicRMSD.cc.

References recovery_threshold_.

Referenced by get_parameters(), and measure_rotamer_recovery().

bool protocols::rotamer_recovery::RRComparerAutomorphicRMSD::measure_rotamer_recovery ( core::pose::Pose const &  pose1, core::pose::Pose const &  pose2, core::conformation::Residue const &  res1, core::conformation::Residue const &  res2, core::Real &  score, bool &  recovered  )

virtual

Implements protocols::rotamer_recovery::RRComparer.

Definition at line 74 of file RRComparerAutomorphicRMSD.cc.

References core::conformation::Residue::aa(), core::scoring::automorphic_rmsd(), core::pose::Pose::conformation(), core::conformation::copy_residue_coordinates_and_rebuild_missing_atoms(), core::conformation::ResidueFactory::create_residue(), get_include_backbone_atoms(), get_recovery_threshold(), core::chemical::ResidueType::name(), core::conformation::Residue::name(), core::conformation::Residue::nheavyatoms(), core::chemical::num_canonical_aas, core::conformation::Residue::residue_type_set(), core::conformation::Residue::seqpos(), protocols::rotamer_recovery::TR(), and core::conformation::Residue::type().

void protocols::rotamer_recovery::RRComparerAutomorphicRMSD::set_include_backbone_atoms ( bool const  include_backbone_atoms)

virtual

Definition at line 135 of file RRComparerAutomorphicRMSD.cc.

References include_backbone_atoms_.

void protocols::rotamer_recovery::RRComparerAutomorphicRMSD::set_recovery_threshold ( core::Real const  recovery_threshold)

virtual

Implements protocols::rotamer_recovery::RRComparer.

Definition at line 147 of file RRComparerAutomorphicRMSD.cc.

References recovery_threshold_.

Member Data Documentation

bool protocols::rotamer_recovery::RRComparerAutomorphicRMSD::include_backbone_atoms_

private

Definition at line 90 of file RRComparerAutomorphicRMSD.hh.

Referenced by get_include_backbone_atoms(), and set_include_backbone_atoms().

core::Real protocols::rotamer_recovery::RRComparerAutomorphicRMSD::recovery_threshold_

private

Definition at line 91 of file RRComparerAutomorphicRMSD.hh.

Referenced by get_recovery_threshold(), and set_recovery_threshold().

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The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RRComparerAutomorphicRMSD.hh
• src/protocols/rotamer_recovery/RRComparerAutomorphicRMSD.cc