core::fragment::picking_old::vall::VallSection Class Reference

class implementing the Book concept for a continuous section of lines in the Vall library More...

#include <VallSection.hh>

Inheritance diagram for core::fragment::picking_old::vall::VallSection:

Collaboration diagram for core::fragment::picking_old::vall::VallSection:

Public Types
typedef Super::PageConstIterator	PageConstIterator
	typedef for Book concept More...
typedef Super::PageIterator	PageIterator
	typedef for Book concept More...
typedef PageConstIterator	VallResidueConstIterator
typedef PageIterator	VallResidueIterator
Public Types inherited from core::fragment::picking_old::concepts::Book< VallResidues >
typedef core::Size	Size
typedef VallResidues::Page	Page
typedef VallResidues::const_iterator	PageConstIterator
typedef VallResidues::iterator	PageIterator

Public Member Functions
VallResidue const &	operator[] (Size const idx) const
	access a specific VallResidue within this section, 1-based indexing More...
void	append_residue (VallResidue const &r)
	append a residue to the end of this section More...
void	reindex_residues ()
	re-index VallResidues within this library so they number 1 .. n More...
Size	index () const
	stores the 1-based indexing for accessing this section via VallLibrary::operator [] More...
void	index (Size const idx)
	stores the 1-based indexing for accessing this section via VallLibrary::operator [] More...
void	reserve (Size const n)
	ensure storage currently allocated for residues is at least the given size More...
void	tighten_memory ()
	tighten memory usage More...
Public Member Functions inherited from core::fragment::picking_old::concepts::Book< VallResidues >
	Book ()
	default constructor More...
	Book (VallResiduesconst &pages)
	Pages constructor. More...
	~Book ()
	default destructor More...
PageConstIterator	begin () const
	return an iterator that points to the first Page in this book More...
PageIterator	begin ()
	return an iterator that points to the first Page in this book More...
PageConstIterator	end () const
	return an iterator that points just beyond the last Page of this book More...
PageIterator	end ()
	return an iterator that points just beyond the last Page of this book More...
Size	size () const
	number of pages in the book More...
void	clear ()
	clear the book More...

Private Types
typedef core::fragment::picking_old::concepts::Book < VallResidues >	Super

Private Member Functions
VallResidues const &	residues () const
	return residues container More...
VallResidues &	residues ()
	return residues container More...

Private Attributes
Size	index_
	stores the 1-based indexing for accessing this section via VallLibrary::operator [] More...

Additional Inherited Members
Protected Member Functions inherited from core::fragment::picking_old::concepts::Book< VallResidues >
VallResiduesconst &	pages () const
	return the pages in this book More...
VallResidues &	pages ()
	return the pages in this book More...

Detailed Description

class implementing the Book concept for a continuous section of lines in the Vall library

Definition at line 37 of file VallSection.hh.

Member Typedef Documentation

typedef Super::PageConstIterator core::fragment::picking_old::vall::VallSection::PageConstIterator

typedef for Book concept

Definition at line 50 of file VallSection.hh.

typedef Super::PageIterator core::fragment::picking_old::vall::VallSection::PageIterator

typedef for Book concept

Definition at line 54 of file VallSection.hh.

typedef core::fragment::picking_old::concepts::Book< VallResidues > core::fragment::picking_old::vall::VallSection::Super

private

Definition at line 43 of file VallSection.hh.

typedef PageConstIterator core::fragment::picking_old::vall::VallSection::VallResidueConstIterator

Definition at line 60 of file VallSection.hh.

typedef PageIterator core::fragment::picking_old::vall::VallSection::VallResidueIterator

Definition at line 61 of file VallSection.hh.

Member Function Documentation

void core::fragment::picking_old::vall::VallSection::append_residue ( VallResidue const &  r)

inline

append a residue to the end of this section

Definition at line 82 of file VallSection.hh.

References index_, residues(), and core::fragment::picking_old::concepts::Book< VallResidues >::size().

Referenced by core::fragment::picking_old::vall::vall_library_from_file().

Size core::fragment::picking_old::vall::VallSection::index ( ) const

inline

stores the 1-based indexing for accessing this section via VallLibrary::operator []

Definition at line 105 of file VallSection.hh.

References index_.

void core::fragment::picking_old::vall::VallSection::index ( Size const  idx)

inline

stores the 1-based indexing for accessing this section via VallLibrary::operator []

Definition at line 116 of file VallSection.hh.

References core::fragment::picking_old::concepts::Book< VallResidues >::begin(), core::fragment::picking_old::concepts::Book< VallResidues >::end(), and index_.

VallResidue const& core::fragment::picking_old::vall::VallSection::operator[] ( Size const  idx) const

inline

access a specific VallResidue within this section, 1-based indexing

Definition at line 72 of file VallSection.hh.

References residues().

void core::fragment::picking_old::vall::VallSection::reindex_residues ( )

inline

re-index VallResidues within this library so they number 1 .. n

Definition at line 91 of file VallSection.hh.

References core::fragment::picking_old::concepts::Book< VallResidues >::begin(), and core::fragment::picking_old::concepts::Book< VallResidues >::end().

void core::fragment::picking_old::vall::VallSection::reserve ( Size const  n)

inline

ensure storage currently allocated for residues is at least the given size

Definition at line 129 of file VallSection.hh.

References residues().

VallResidues const& core::fragment::picking_old::vall::VallSection::residues ( ) const

inlineprivate

return residues container

Definition at line 151 of file VallSection.hh.

References core::fragment::picking_old::concepts::Book< VallResidues >::pages().

Referenced by append_residue(), operator[](), reserve(), and tighten_memory().

VallResidues& core::fragment::picking_old::vall::VallSection::residues ( )

inlineprivate

return residues container

Definition at line 158 of file VallSection.hh.

References core::fragment::picking_old::concepts::Book< VallResidues >::pages().

void core::fragment::picking_old::vall::VallSection::tighten_memory ( )

inline

tighten memory usage

Shrinks the capacity of the VallResidues by performing a swap, so this operation will effectively require a similar amount of memory as the current residue object.

Definition at line 139 of file VallSection.hh.

References residues(), and core::fragment::picking_old::concepts::Book< VallResidues >::size().

Member Data Documentation

Size core::fragment::picking_old::vall::VallSection::index_

private

stores the 1-based indexing for accessing this section via VallLibrary::operator []

Definition at line 168 of file VallSection.hh.

Referenced by append_residue(), and index().

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The documentation for this class was generated from the following file:

• src/core/fragment/picking_old/vall/VallSection.hh