protocols::frag_picker::scores::ProfileScoreSubMatrix Member List

This is the complete list of members for protocols::frag_picker::scores::ProfileScoreSubMatrix, including all inherited members.

cached_score(FragmentCandidateOP, FragmentScoreMapOP)	protocols::frag_picker::scores::ProfileScoreSubMatrix	virtual
cached_scores_id_	protocols::frag_picker::scores::ProfileScoreSubMatrix	private
CachingScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)	protocols::frag_picker::scores::CachingScoringMethod	inline
clean_up()	protocols::frag_picker::scores::ProfileScoreSubMatrix	inlinevirtual
clear()	protocols::frag_picker::scores::ProfileScoreSubMatrix	private
do_caching(VallChunkOP)	protocols::frag_picker::scores::ProfileScoreSubMatrix	virtual
FragmentScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_id()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_min_allowed_score()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_priority()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_score_name()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_use_lowest()	protocols::frag_picker::scores::FragmentScoringMethod	inline
id_	protocols::frag_picker::scores::FragmentScoringMethod	protected
lowest_acceptable_value_	protocols::frag_picker::scores::FragmentScoringMethod	protected
name_	protocols::frag_picker::scores::FragmentScoringMethod	protected
priority_	protocols::frag_picker::scores::FragmentScoringMethod	protected
ProfileScoreSubMatrix(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string sequence, Size longest_vall_chunk, std::string subMatrixFile)	protocols::frag_picker::scores::ProfileScoreSubMatrix
score(FragmentCandidateOP, FragmentScoreMapOP)	protocols::frag_picker::scores::ProfileScoreSubMatrix	virtual
scores_	protocols::frag_picker::scores::ProfileScoreSubMatrix	protected
sequence_	protocols::frag_picker::scores::ProfileScoreSubMatrix	private
set_id(Size id)	protocols::frag_picker::scores::FragmentScoringMethod	inline
set_min_allowed_score(Real lowest_acceptable_value)	protocols::frag_picker::scores::FragmentScoringMethod	inline
sub_matrix_	protocols::frag_picker::scores::ProfileScoreSubMatrix	private
subMatrixFile_	protocols::frag_picker::scores::ProfileScoreSubMatrix	private
use_lowest_	protocols::frag_picker::scores::FragmentScoringMethod	protected
~ProfileScoreSubMatrix()	protocols::frag_picker::scores::ProfileScoreSubMatrix