#include <NMerPSSMEnergyFilter.hh>

Inheritance diagram for protocols::simple_filters::NMerPSSMEnergyFilter:

Collaboration diagram for protocols::simple_filters::NMerPSSMEnergyFilter:

Public Member Functions
	NMerPSSMEnergyFilter ()

	NMerPSSMEnergyFilter (core::Real const score_type_threshold, std::string string_resnums)

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

filters::FilterOP	clone () const

filters::FilterOP	fresh_instance () const

void	report (std::ostream &out, core::pose::Pose const &pose) const

core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

core::Real	compute_residue (core::pose::Pose const &pose, core::Size const seqpos) const

core::Real	compute (core::pose::Pose const &pose) const

virtual	~NMerPSSMEnergyFilter ()

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
core::Real	score_type_threshold_

std::string	string_resnums_

core::scoring::methods::NMerPSSMEnergy	energy_method_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 32 of file NMerPSSMEnergyFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::NMerPSSMEnergyFilter::NMerPSSMEnergyFilter ( )

Definition at line 59 of file NMerPSSMEnergyFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::NMerPSSMEnergyFilter::NMerPSSMEnergyFilter	(	core::Real const	score_type_threshold,
		std::string	string_resnums
	)

Definition at line 65 of file NMerPSSMEnergyFilter.cc.

References score_type_threshold_, and string_resnums_.

protocols::simple_filters::NMerPSSMEnergyFilter::~NMerPSSMEnergyFilter ( )

virtual

Definition at line 75 of file NMerPSSMEnergyFilter.cc.

Member Function Documentation

bool protocols::simple_filters::NMerPSSMEnergyFilter::apply ( core::pose::Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 93 of file NMerPSSMEnergyFilter.cc.

References compute(), protocols::filters::Filter::score(), score_type_threshold_, and protocols::simple_filters::TR().

filters::FilterOP protocols::simple_filters::NMerPSSMEnergyFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 43 of file NMerPSSMEnergyFilter.hh.

References NMerPSSMEnergyFilter().

core::Real protocols::simple_filters::NMerPSSMEnergyFilter::compute ( core::pose::Pose const & pose) const

Definition at line 130 of file NMerPSSMEnergyFilter.cc.

References compute_residue(), core::pose::get_resnum_list_ordered(), protocols::filters::Filter::score(), string_resnums_, and core::pose::Pose::total_residue().

Referenced by apply(), report(), and report_sm().

core::Real protocols::simple_filters::NMerPSSMEnergyFilter::compute_residue	(	core::pose::Pose const &	pose,
		core::Size const	seqpos
	)		const

Definition at line 117 of file NMerPSSMEnergyFilter.cc.

References energy_method_, core::scoring::nmer_pssm, core::pose::Pose::residue(), core::scoring::methods::NMerPSSMEnergy::residue_energy(), and core::pose::Pose::total_residue().

Referenced by compute().

filters::FilterOP protocols::simple_filters::NMerPSSMEnergyFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 46 of file NMerPSSMEnergyFilter.hh.

References NMerPSSMEnergyFilter().

void protocols::simple_filters::NMerPSSMEnergyFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)