#include <SaltBridgeFeatures.hh>

Inheritance diagram for protocols::features::SaltBridgeFeatures:

Collaboration diagram for protocols::features::SaltBridgeFeatures:

Public Member Functions
	SaltBridgeFeatures ()

	SaltBridgeFeatures (core::Length distance_cutoff)

	SaltBridgeFeatures (SaltBridgeFeatures const &src)

virtual	~SaltBridgeFeatures ()

core::Length	distance_cutoff () const

void	distance_cutoff (core::Length d)

std::string	type_name () const
	return string with class name More...

void	write_schema_to_db (utility::sql_database::sessionOP db_session) const
	generate the table schemas and write them to the database More...

utility::vector1< std::string >	features_reporter_dependencies () const
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...

core::Size	report_features (core::pose::Pose const &pose, utility::vector1< bool > const &, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	collect all the feature data for the pose More...

Public Member Functions inherited from protocols::features::FeaturesReporter
virtual	~FeaturesReporter ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

core::Size	report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

virtual void	load_into_pose (utility::sql_database::sessionOP, boost::uuids::uuid, core::pose::Pose &)

virtual void	delete_record (boost::uuids::uuid, utility::sql_database::sessionOP)

Private Member Functions
void	write_salt_bridges_table_schema (utility::sql_database::sessionOP db_session) const
	generate the salt_bridges table schema More...

Private Attributes
core::Length	distance_cutoff_

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Detailed Description

Definition at line 38 of file SaltBridgeFeatures.hh.

Constructor & Destructor Documentation

protocols::features::SaltBridgeFeatures::SaltBridgeFeatures ( )

Definition at line 85 of file SaltBridgeFeatures.cc.

protocols::features::SaltBridgeFeatures::SaltBridgeFeatures ( core::Length distance_cutoff)

protocols::features::SaltBridgeFeatures::SaltBridgeFeatures ( SaltBridgeFeatures const & src)

Definition at line 96 of file SaltBridgeFeatures.cc.

virtual protocols::features::SaltBridgeFeatures::~SaltBridgeFeatures ( )

inlinevirtual

Definition at line 46 of file SaltBridgeFeatures.hh.

Member Function Documentation

core::Length protocols::features::SaltBridgeFeatures::distance_cutoff ( ) const

inline

Definition at line 49 of file SaltBridgeFeatures.hh.

References distance_cutoff_.

void protocols::features::SaltBridgeFeatures::distance_cutoff ( core::Length d)

inline

Definition at line 52 of file SaltBridgeFeatures.hh.

References distance_cutoff_.

utility::vector1< std::string > protocols::features::SaltBridgeFeatures::features_reporter_dependencies ( ) const

virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 161 of file SaltBridgeFeatures.cc.

Size protocols::features::SaltBridgeFeatures::report_features	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	,
		boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)