ScoreFunction.cc File Reference

ScoreFunction class definition. More...

#include <core/scoring/ScoreFunction.hh>
#include <algorithm>
#include <string>
#include <vector>
#include <boost/algorithm/string/join.hpp>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/EnergiesCacheableDataType.hh>
#include <core/scoring/MinimizationGraph.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreFunctionInfo.hh>
#include <core/scoring/methods/EnergyMethod.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/methods/ContextIndependentLRTwoBodyEnergy.hh>
#include <core/scoring/methods/ContextIndependentTwoBodyEnergy.hh>
#include <core/scoring/methods/ContextDependentLRTwoBodyEnergy.hh>
#include <core/scoring/methods/ContextDependentTwoBodyEnergy.hh>
#include <core/scoring/methods/ContextIndependentOneBodyEnergy.hh>
#include <core/scoring/methods/ContextDependentOneBodyEnergy.hh>
#include <core/scoring/methods/TwoBodyEnergy.hh>
#include <core/scoring/methods/WholeStructureEnergy.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/scoring/LREnergyContainer.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParam.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParamSet.hh>
#include <core/scoring/Energies.hh>
#include <core/kinematics/MinimizerMapBase.hh>
#include <core/id/TorsionID.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/symmetry/util.hh>
#include <core/pose/Pose.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <basic/database/open.hh>
#include <numeric/random/DistributionSampler.hh>
#include <ObjexxFCL/format.hh>
#include <utility/io/izstream.hh>
#include <utility/string_util.hh>
#include <core/id/DOF_ID.hh>
#include <utility/vector1.hh>
#include <core/scoring/EnergyGraph.hh>

Go to the source code of this file.

Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::scoring

Constant Groups
	core
	A class for defining atom parameters, known as atom_types.
	core::scoring

Functions
static basic::Tracer	tr ("core.scoring")
	Utility headers. More...
void	core::scoring::show_detail (std::ostream &out, EnergyMap &energies, EnergyMap weights)
template<class T >
void	core::scoring::vector1_remove (utility::vector1< T > &v, T const &t)
	private – handles setting the derived data More...
std::string	core::scoring::find_weights_file (std::string name, std::string extension)
	Utility function to locate a weights or patch file, either with a fully qualified path, in the local directory, or in the database. Names may be passed either with or without the optional extension. More...

Detailed Description

ScoreFunction class definition.

ScoreFunction class definition. A easy way to deal with the low-res score function problem in replica docking.

Atom pair energy functions.

Author

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

Kevin P. Hinshaw (Kevin.nosp@m.Hins.nosp@m.haw@g.nosp@m.mail.nosp@m..com)

Modified by Sergey Lyskov

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

Kevin P. Hinshaw (Kevin.nosp@m.Hins.nosp@m.haw@g.nosp@m.mail.nosp@m..com)

Stuart G. Mentzer (Stuar.nosp@m.t_Me.nosp@m.ntzer.nosp@m.@obj.nosp@m.exx.c.nosp@m.om)

Kevin P. Hinshaw (Kevin.nosp@m.Hins.nosp@m.haw@g.nosp@m.mail.nosp@m..com)

Christopher Miles (cmile.nosp@m.s@uw.nosp@m..edu)

Zhe Zhang

Definition in file ScoreFunction.cc.

Function Documentation

static basic::Tracer tr ( "core.scoring"  )

static

Utility headers.

Referenced by core::scoring::ScoreFunction::_add_weights_from_file(), and core::scoring::ScoreFunction::perturb_weights().