#include <ResidueConformationFeatures.hh>

Inheritance diagram for protocols::features::ResidueConformationFeatures:

Collaboration diagram for protocols::features::ResidueConformationFeatures:

Public Member Functions
	ResidueConformationFeatures ()

	ResidueConformationFeatures (ResidueConformationFeatures const &)

virtual	~ResidueConformationFeatures ()

virtual void	write_schema_to_db (utility::sql_database::sessionOP db_session) const
	generate the table schemas and write them to the database More...

utility::vector1< std::string >	features_reporter_dependencies () const
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...

std::string	type_name () const
	return string with class name More...

core::Size	report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	collect all the feature data for the pose More...

void	delete_record (boost::uuids::uuid struct_id, utility::sql_database::sessionOP)

void	load_into_pose (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)

void	load_conformation (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)

Public Member Functions inherited from protocols::features::FeaturesReporter
virtual	~FeaturesReporter ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

core::Size	report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

Private Member Functions
void	set_coords_for_residue (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::Size seqpos, core::pose::Pose &pose)

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Detailed Description

Definition at line 41 of file ResidueConformationFeatures.hh.

Constructor & Destructor Documentation

protocols::features::ResidueConformationFeatures::ResidueConformationFeatures ( )

inline

Definition at line 43 of file ResidueConformationFeatures.hh.

protocols::features::ResidueConformationFeatures::ResidueConformationFeatures ( ResidueConformationFeatures const & )

inline

Definition at line 45 of file ResidueConformationFeatures.hh.

virtual protocols::features::ResidueConformationFeatures::~ResidueConformationFeatures ( )

inlinevirtual

Definition at line 50 of file ResidueConformationFeatures.hh.

Member Function Documentation

void protocols::features::ResidueConformationFeatures::delete_record	(	boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 273 of file ResidueConformationFeatures.cc.

utility::vector1< std::string > protocols::features::ResidueConformationFeatures::features_reporter_dependencies ( ) const

virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 157 of file ResidueConformationFeatures.cc.

void protocols::features::ResidueConformationFeatures::load_conformation	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::pose::Pose &	pose
	)

Definition at line 300 of file ResidueConformationFeatures.cc.

References core::pose::Pose::is_fullatom(), core::chemical::ResidueType::is_protein(), core::scoring::omega, protocols::swa::phi(), protocols::swa::psi(), core::pose::Pose::residue_type(), core::pose::Pose::set_chi(), set_coords_for_residue(), core::pose::Pose::set_omega(), core::pose::Pose::set_phi(), and core::pose::Pose::set_psi().

Referenced by load_into_pose().

void protocols::features::ResidueConformationFeatures::load_into_pose	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::pose::Pose &	pose
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 291 of file ResidueConformationFeatures.cc.

References load_conformation().

Size protocols::features::ResidueConformationFeatures::report_features	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	relevant_residues,
		boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)

virtual

collect all the feature data for the pose

Implements protocols::features::FeaturesReporter.

Definition at line 164 of file ResidueConformationFeatures.cc.

void protocols::features::ResidueConformationFeatures::set_coords_for_residue	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::Size	seqpos,
		core::pose::Pose &	pose
	)