protocols::swa::rna::StepWiseRNA_BaseCentroidScreener Member List

This is the complete list of members for protocols::swa::rna::StepWiseRNA_BaseCentroidScreener, including all inherited members.

base_pair_axis_cutoff_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_pair_dist_max_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_pair_dist_min_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_pair_planarity_cutoff_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_pair_rho_max_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_pair_rho_min_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_pair_z_offset_cutoff_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_stack_axis_cutoff_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_stack_dist_cutoff_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_stack_planarity_cutoff_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_stack_z_offset_max_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_stack_z_offset_min_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
base_stub_list_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
check_base_pairing(core::kinematics::Stub const &rebuild_residue_base_stub, core::kinematics::Stub const &base_stub) const	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
Check_centroid_interaction(SillyCountStruct &count_data) const	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
check_stack_base(core::kinematics::Stub const &rebuild_residue_base_stub, core::kinematics::Stub const &base_stub, bool const verbose=false) const	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
check_stack_base(Size const &pos1, Size const &pos2, bool const verbose=false)	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
Check_that_terminal_res_are_unstacked(bool const verbose=false)	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener
fixed_residues_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
Initialize_base_stub_list(core::pose::Pose const &pose, bool const verbose=false)	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
Initialize_is_virtual_base(core::pose::Pose const &pose, bool const verbose=false)	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
Initialize_terminal_res(core::pose::Pose const &pose)	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
is_fixed_res_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
is_moving_res_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
is_terminal_res_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
is_virtual_base_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
job_parameters_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
moving_residues_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
rna_centroid_info_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
stacked_on_terminal_res_in_original_pose_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
StepWiseRNA_BaseCentroidScreener(core::pose::Pose const &pose, StepWiseRNA_JobParametersCOP &job_parameters)	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener
terminal_res_	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
Update_base_stub_list(core::pose::Pose const &pose)	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	private
Update_base_stub_list_and_Check_centroid_interaction(core::pose::Pose const &pose, SillyCountStruct &count_data)	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener
Update_base_stub_list_and_Check_that_terminal_res_are_unstacked(core::pose::Pose const &pose, bool const reinitialize=false)	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener
~StepWiseRNA_BaseCentroidScreener()	protocols::swa::rna::StepWiseRNA_BaseCentroidScreener	virtual