#include <SecondaryStructureFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::SecondaryStructureFilter:

Collaboration diagram for protocols::fldsgn::filters::SecondaryStructureFilter:

Public Types
typedef protocols::filters::Filter	Super

typedef protocols::filters::Filter	Filter

typedef std::string	String

typedef protocols::filters::FilterOP	FilterOP

typedef core::pose::Pose	Pose

typedef utility::tag::TagPtr	TagPtr

typedef protocols::filters::Filters_map	Filters_map

typedef protocols::moves::DataMap	DataMap

typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	SecondaryStructureFilter ()

	SecondaryStructureFilter (String const &ss)

	SecondaryStructureFilter (SecondaryStructureFilter const &rval)

virtual	~SecondaryStructureFilter ()

virtual FilterOP	clone () const

virtual FilterOP	fresh_instance () const

void	filtered_ss (String const &s)

void	filtered_abego (String const &s)

virtual std::string	name () const

virtual void	parse_my_tag (TagPtr const tag, DataMap &, Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...

virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual void	report (std::ostream &, core::pose::Pose const &) const

virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
String	filtered_ss_

utility::vector1< String >	filtered_abego_

bool	use_abego_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 43 of file SecondaryStructureFilter.hh.

Member Typedef Documentation

typedef protocols::moves::DataMap protocols::fldsgn::filters::SecondaryStructureFilter::DataMap

Definition at line 54 of file SecondaryStructureFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::SecondaryStructureFilter::Filter

Definition at line 47 of file SecondaryStructureFilter.hh.

typedef protocols::filters::FilterOP protocols::fldsgn::filters::SecondaryStructureFilter::FilterOP

Definition at line 49 of file SecondaryStructureFilter.hh.

typedef protocols::filters::Filters_map protocols::fldsgn::filters::SecondaryStructureFilter::Filters_map

Definition at line 53 of file SecondaryStructureFilter.hh.

typedef protocols::moves::Movers_map protocols::fldsgn::filters::SecondaryStructureFilter::Movers_map

Definition at line 55 of file SecondaryStructureFilter.hh.

typedef core::pose::Pose protocols::fldsgn::filters::SecondaryStructureFilter::Pose

Definition at line 50 of file SecondaryStructureFilter.hh.

typedef std::string protocols::fldsgn::filters::SecondaryStructureFilter::String

Definition at line 48 of file SecondaryStructureFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::SecondaryStructureFilter::Super

Definition at line 46 of file SecondaryStructureFilter.hh.

typedef utility::tag::TagPtr protocols::fldsgn::filters::SecondaryStructureFilter::TagPtr

Definition at line 52 of file SecondaryStructureFilter.hh.

Constructor & Destructor Documentation

protocols::fldsgn::filters::SecondaryStructureFilter::SecondaryStructureFilter ( )

Definition at line 45 of file SecondaryStructureFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::SecondaryStructureFilter::SecondaryStructureFilter ( String const & ss)

Definition at line 53 of file SecondaryStructureFilter.cc.

protocols::fldsgn::filters::SecondaryStructureFilter::SecondaryStructureFilter ( SecondaryStructureFilter const & rval)

Definition at line 60 of file SecondaryStructureFilter.cc.

virtual protocols::fldsgn::filters::SecondaryStructureFilter::~SecondaryStructureFilter ( )

inlinevirtual

Definition at line 70 of file SecondaryStructureFilter.hh.

Member Function Documentation

bool protocols::fldsgn::filters::SecondaryStructureFilter::apply ( Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 86 of file SecondaryStructureFilter.cc.

References core::scoring::abego, core::util::ABEGOManager::check_rama(), filtered_abego_, filtered_ss_, core::util::ABEGOManager::get_abego_string(), core::pose::Pose::omega(), core::pose::Pose::phi(), core::pose::Pose::psi(), core::pose::Pose::secstruct(), core::pose::Pose::total_residue(), tr(), and use_abego_.

virtual FilterOP protocols::fldsgn::filters::SecondaryStructureFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 77 of file SecondaryStructureFilter.hh.

References SecondaryStructureFilter().

void protocols::fldsgn::filters::SecondaryStructureFilter::filtered_abego ( String const & s)

Definition at line 75 of file SecondaryStructureFilter.cc.

References filtered_abego_, and use_abego_.

void protocols::fldsgn::filters::SecondaryStructureFilter::filtered_ss ( String const & s)

Definition at line 69 of file SecondaryStructureFilter.cc.

References filtered_ss_.

virtual FilterOP protocols::fldsgn::filters::SecondaryStructureFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 80 of file SecondaryStructureFilter.hh.

References SecondaryStructureFilter().

virtual std::string protocols::fldsgn::filters::SecondaryStructureFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

Definition at line 97 of file SecondaryStructureFilter.hh.

void protocols::fldsgn::filters::SecondaryStructureFilter::parse_my_tag	(	TagPtr const	tag,
		DataMap &	,
		Filters_map const &	,
		Movers_map const &	,
		Pose const &
	)