protocols::pmut_scan::MutationData Class Reference

#include <Mutant.hh>

Collaboration diagram for protocols::pmut_scan::MutationData:

Public Member Functions
	MutationData (char wt_residue, char mut_residue, core::Size pose_resnum, core::Size pdb_resnum, char icode, char chain)
	Constructor for MutationData objects. A mutation holds the wt and mutant amino acid type, pdb resnum, pose resnum, chain and icode. More...
	~MutationData ()
	Destructor for MutationData objects. No dynamically allocated memory held in MutationData objects so nothing to do here. More...
std::string	mutation_string () const
	Returns a string representation of this mutation. More...
std::string	mutation_string_PDB_numbering () const
	Returns a string representation of this mutation using PDB not pose numbering. More...
char	mut_residue () const
	Accessor for the mut_residue member variable. Needed by the function make_mutant_structure() in the PointMutScanDriver class. More...
core::Size	pose_resnum () const
	Accessor for the pose_resnum member variable. Needed by the function make_mutant_structure() in the PointMutScanDriver class. More...
char	pdb_chain () const
void	print_mutation_data (MutationData &md)
	print function for MutationData class; only used by unit tests More...
bool	operator== (const MutationData &md_other) const
	function which tests two MutationData objects for equality; only used by unit tests More...

Private Attributes
char	wt_residue_
char	mut_residue_
core::Size	pose_resnum_
core::Size	pdb_resnum_
char	icode_
char	chain_

Friends
class	Mutant
class	PointMutScanDriver
std::ostream &	operator<< (std::ostream &os, const MutationData &md)

Detailed Description

Definition at line 41 of file Mutant.hh.

Constructor & Destructor Documentation

protocols::pmut_scan::MutationData::MutationData	(	char	wt_residue,
		char	mut_residue,
		core::Size	pose_resnum,
		core::Size	pdb_resnum,
		char	icode,
		char	chain
	)

Constructor for MutationData objects. A mutation holds the wt and mutant amino acid type, pdb resnum, pose resnum, chain and icode.

MutationData::MutationData

Definition at line 47 of file Mutant.cc.

protocols::pmut_scan::MutationData::~MutationData

(

)

Destructor for MutationData objects. No dynamically allocated memory held in MutationData objects so nothing to do here.

MutationData::~MutationData

Definition at line 63 of file Mutant.cc.

Member Function Documentation

char protocols::pmut_scan::MutationData::mut_residue

(

)

const

Accessor for the mut_residue member variable. Needed by the function make_mutant_structure() in the PointMutScanDriver class.

MutationData::mut_residue

Definition at line 100 of file Mutant.cc.

References mut_residue_.

Referenced by protocols::pmut_scan::PointMutScanDriver::make_mutant_structure().

std::string protocols::pmut_scan::MutationData::mutation_string

(

)

const

Returns a string representation of this mutation.

MutationData::mutation_string

Definition at line 72 of file Mutant.cc.

References chain_, mut_residue_, pose_resnum_, and wt_residue_.

Referenced by protocols::pmut_scan::PointMutScanDriver::make_mutant_structure(), and protocols::pmut_scan::PointMutScanDriver::make_specific_mutant().

std::string protocols::pmut_scan::MutationData::mutation_string_PDB_numbering

(

)

const

Returns a string representation of this mutation using PDB not pose numbering.

MutationData::mutation_string_PDB_numbering

Definition at line 84 of file Mutant.cc.

References chain_, icode_, mut_residue_, pdb_resnum_, and wt_residue_.

Referenced by protocols::pmut_scan::PointMutScanDriver::make_specific_mutant().

bool protocols::pmut_scan::MutationData::operator==

(

const MutationData &

md_other)

const

function which tests two MutationData objects for equality; only used by unit tests

MutationData::mutation_data_equals

Definition at line 130 of file Mutant.cc.

References chain_, icode_, mut_residue_, pdb_resnum_, pose_resnum_, and wt_residue_.

char protocols::pmut_scan::MutationData::pdb_chain ( ) const

inline

Definition at line 54 of file Mutant.hh.

References chain_.

core::Size protocols::pmut_scan::MutationData::pose_resnum

(

)

const

Accessor for the pose_resnum member variable. Needed by the function make_mutant_structure() in the PointMutScanDriver class.

MutationData::pose_resnum

Definition at line 110 of file Mutant.cc.

References pose_resnum_.

Referenced by protocols::pmut_scan::PointMutScanDriver::make_mutant_structure().

void protocols::pmut_scan::MutationData::print_mutation_data

(

MutationData &

md)

print function for MutationData class; only used by unit tests

MutationData::print_mutation_data

Definition at line 120 of file Mutant.cc.

References chain_, icode_, mut_residue_, pdb_resnum_, pose_resnum_, and wt_residue_.

Friends And Related Function Documentation

friend class Mutant

friend

Definition at line 74 of file Mutant.hh.

std::ostream& operator<< ( std::ostream &  os, const MutationData &  md  )

friend

Definition at line 225 of file Mutant.cc.

friend class PointMutScanDriver

friend

Definition at line 75 of file Mutant.hh.

Member Data Documentation

char protocols::pmut_scan::MutationData::chain_

private

Definition at line 71 of file Mutant.hh.

Referenced by mutation_string(), mutation_string_PDB_numbering(), protocols::pmut_scan::operator<<(), operator==(), pdb_chain(), and print_mutation_data().

char protocols::pmut_scan::MutationData::icode_

private

Definition at line 70 of file Mutant.hh.

Referenced by mutation_string_PDB_numbering(), protocols::pmut_scan::operator<<(), operator==(), and print_mutation_data().

char protocols::pmut_scan::MutationData::mut_residue_

private

Definition at line 67 of file Mutant.hh.

Referenced by mut_residue(), mutation_string(), mutation_string_PDB_numbering(), protocols::pmut_scan::operator<<(), operator==(), and print_mutation_data().

core::Size protocols::pmut_scan::MutationData::pdb_resnum_

private

Definition at line 69 of file Mutant.hh.

Referenced by mutation_string_PDB_numbering(), protocols::pmut_scan::operator<<(), operator==(), and print_mutation_data().

core::Size protocols::pmut_scan::MutationData::pose_resnum_

private

Definition at line 68 of file Mutant.hh.

Referenced by mutation_string(), protocols::pmut_scan::operator<<(), operator==(), pose_resnum(), and print_mutation_data().

char protocols::pmut_scan::MutationData::wt_residue_

private

Definition at line 66 of file Mutant.hh.

Referenced by mutation_string(), mutation_string_PDB_numbering(), protocols::pmut_scan::operator<<(), operator==(), and print_mutation_data().

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The documentation for this class was generated from the following files:

• src/protocols/pmut_scan/Mutant.hh
• src/protocols/pmut_scan/Mutant.cc