#include <ConservedPosMutationFilter.hh>

Inheritance diagram for protocols::simple_filters::ConservedPosMutationFilter:

Collaboration diagram for protocols::simple_filters::ConservedPosMutationFilter:

Public Types
typedef filters::Filter	parent

typedef filters::Filter	Filter

typedef filters::FilterOP	FilterOP

Public Member Functions
	ConservedPosMutationFilter ()

	~ConservedPosMutationFilter ()

FilterOP	clone () const

FilterOP	fresh_instance () const

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

virtual bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. In this case, a pose passes if it less than max_allowed_conserved_pos_mutations_ mutations at conserved position. the decision whether a given position counts as conserved is made by the RestrictConservedLowDdgOperation task operation to prevent duplication of code. More...

void	set_max_allowed_conserved_pos_mutations (core::Size value)

virtual std::string	name () const

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual void	report (std::ostream &, core::pose::Pose const &) const

virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
toolbox::task_operations::RestrictConservedLowDdgOperationOP	conserved_pos_taskop_

core::Size	max_allowed_conserved_pos_mutations_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 42 of file ConservedPosMutationFilter.hh.

Member Typedef Documentation

typedef filters::Filter protocols::simple_filters::ConservedPosMutationFilter::Filter

Definition at line 46 of file ConservedPosMutationFilter.hh.

typedef filters::FilterOP protocols::simple_filters::ConservedPosMutationFilter::FilterOP

Definition at line 47 of file ConservedPosMutationFilter.hh.

typedef filters::Filter protocols::simple_filters::ConservedPosMutationFilter::parent

Definition at line 45 of file ConservedPosMutationFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::ConservedPosMutationFilter::ConservedPosMutationFilter ( )

Definition at line 46 of file ConservedPosMutationFilter.cc.

Referenced by clone(), protocols::simple_filters::ConservedPosMutationFilterCreator::create_filter(), and fresh_instance().

protocols::simple_filters::ConservedPosMutationFilter::~ConservedPosMutationFilter ( )

Definition at line 53 of file ConservedPosMutationFilter.cc.

Member Function Documentation

bool protocols::simple_filters::ConservedPosMutationFilter::apply ( core::pose::Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise. In this case, a pose passes if it less than max_allowed_conserved_pos_mutations_ mutations at conserved position. the decision whether a given position counts as conserved is made by the RestrictConservedLowDdgOperation task operation to prevent duplication of code.

Implements protocols::filters::Filter.

Definition at line 65 of file ConservedPosMutationFilter.cc.

References core::chemical::ResidueType::aa(), conserved_pos_taskop_, core::chemical::ResidueType::is_protein(), max_allowed_conserved_pos_mutations_, core::chemical::oneletter_code_from_aa(), core::pose::Pose::residue_type(), core::pose::Pose::total_residue(), and protocols::simple_filters::tr().

filters::FilterOP protocols::simple_filters::ConservedPosMutationFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 56 of file ConservedPosMutationFilter.cc.

References ConservedPosMutationFilter().

filters::FilterOP protocols::simple_filters::ConservedPosMutationFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 60 of file ConservedPosMutationFilter.cc.

References ConservedPosMutationFilter().

virtual std::string protocols::simple_filters::ConservedPosMutationFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

Definition at line 74 of file ConservedPosMutationFilter.hh.

void protocols::simple_filters::ConservedPosMutationFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	,
		filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)