#include <JobDataFeatures.hh>

Inheritance diagram for protocols::features::JobDataFeatures:

Collaboration diagram for protocols::features::JobDataFeatures:

Public Member Functions
	JobDataFeatures ()

	JobDataFeatures (JobDataFeatures const &src)

virtual	~JobDataFeatures ()

std::string	type_name () const
	return string with class name More...

virtual void	write_schema_to_db (utility::sql_database::sessionOP db_session) const
	generate the table schemas and write them to the database More...

utility::vector1< std::string >	features_reporter_dependencies () const
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...

core::Size	report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	collect all the feature data for the pose More...

void	load_into_pose (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)

void	delete_record (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)

Public Member Functions inherited from protocols::features::FeaturesReporter
virtual	~FeaturesReporter ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

core::Size	report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

Private Member Functions
void	insert_string_rows (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session, protocols::jd2::JobCOP job) const

void	insert_string_string_rows (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session, protocols::jd2::JobCOP job) const

void	insert_string_real_rows (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session, protocols::jd2::JobCOP job) const

void	load_string_data (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)

void	load_string_string_data (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)

void	load_string_real_data (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Detailed Description

Definition at line 33 of file JobDataFeatures.hh.

Constructor & Destructor Documentation

protocols::features::JobDataFeatures::JobDataFeatures ( )

Definition at line 56 of file JobDataFeatures.cc.

protocols::features::JobDataFeatures::JobDataFeatures ( JobDataFeatures const & src)

Definition at line 58 of file JobDataFeatures.cc.

protocols::features::JobDataFeatures::~JobDataFeatures ( )

virtual

Definition at line 60 of file JobDataFeatures.cc.

Member Function Documentation

void protocols::features::JobDataFeatures::delete_record	(	boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 132 of file JobDataFeatures.cc.

utility::vector1< std::string > protocols::features::JobDataFeatures::features_reporter_dependencies ( ) const

virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 99 of file JobDataFeatures.cc.

void protocols::features::JobDataFeatures::insert_string_real_rows	(	boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session,
		protocols::jd2::JobCOP	job
	)		const

private

Definition at line 256 of file JobDataFeatures.cc.

Referenced by report_features().

void protocols::features::JobDataFeatures::insert_string_rows	(	boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session,
		protocols::jd2::JobCOP	job
	)		const

private

Definition at line 155 of file JobDataFeatures.cc.

Referenced by report_features().

void protocols::features::JobDataFeatures::insert_string_string_rows	(	boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session,
		protocols::jd2::JobCOP	job
	)		const

private

Definition at line 204 of file JobDataFeatures.cc.

Referenced by report_features().

void protocols::features::JobDataFeatures::load_into_pose	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::pose::Pose &	pose
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 122 of file JobDataFeatures.cc.

References load_string_data(), load_string_real_data(), and load_string_string_data().

void protocols::features::JobDataFeatures::load_string_data	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::pose::Pose &	pose
	)

private

Definition at line 178 of file JobDataFeatures.cc.

References protocols::nonlocal::current_job(), and protocols::jd2::JobDistributor::get_instance().

Referenced by load_into_pose().

void protocols::features::JobDataFeatures::load_string_real_data	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::pose::Pose &	pose
	)

private

Definition at line 281 of file JobDataFeatures.cc.

References protocols::nonlocal::current_job(), and protocols::jd2::JobDistributor::get_instance().

Referenced by load_into_pose().

void protocols::features::JobDataFeatures::load_string_string_data	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::pose::Pose &	pose
	)

private

Definition at line 230 of file JobDataFeatures.cc.

References protocols::nonlocal::current_job(), and protocols::jd2::JobDistributor::get_instance().

Referenced by load_into_pose().

core::Size protocols::features::JobDataFeatures::report_features	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	relevant_residues,
		boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)