InnerMultiThreadingJob.hh

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// vi: set ts=2 noet:
//
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/// @file   protocols/jd2/InnerMultiThreadingJob.hh
/// @author James Thompson

#ifndef INCLUDED_protocols_jd2_InnerMultiThreadingJob_hh
#define INCLUDED_protocols_jd2_InnerMultiThreadingJob_hh

// AUTO-REMOVED #include <protocols/jd2/Job.hh>
#include <protocols/jd2/InnerJob.hh>
#include <protocols/jd2/InnerMultiThreadingJob.fwd.hh>

#include <core/pose/Pose.fwd.hh>
#include <core/sequence/SequenceAlignment.fwd.hh>

#include <utility/pointer/ReferenceCount.hh>
#include <core/types.hh>
#include <utility/vector1.hh>

#include <string>

namespace protocols {
namespace jd2 {

class InnerMultiThreadingJob : public protocols::jd2::InnerJob {
public:
  ///@brief ctor.  Note that it takes only the input tag and max nstruct,
  /// pose instantiation is deferred until the pose is needed
  /* InnerMultiThreadingJob(
    std::string const & input_tag,
    core::Size nstruct_max,
    utility::vector1< core::sequence::SequenceAlignment > const & alns,
    utility::vector1< core::pose::Pose > const & templates
  ); */

  ///@brief ctor.
  InnerMultiThreadingJob(
    core::pose::PoseCOP,
    std::string const & input_tag,
    core::Size nstruct_max,
    utility::vector1< core::sequence::SequenceAlignment > const & alns,
    utility::vector1< core::pose::Pose > const & templates
  );

  utility::vector1< core::sequence::SequenceAlignment > const &
  alignments() const;

  utility::vector1< core::pose::Pose > const &
  template_poses() const;

  virtual ~InnerMultiThreadingJob();

private:
  utility::vector1< core::sequence::SequenceAlignment > const & alns_;
  utility::vector1< core::pose::Pose > const & template_poses_;
};

} // namespace jd2
} // namespace protocols

#endif //INCLUDED_protocols_jd2_InnerMultiThreadingJob_HH