| begin() | core::pack::rotamer_set::RotamerSets | inlinevirtual |
| build_rotamers(pose::Pose const &pose, scoring::ScoreFunction const &scfxn, graph::GraphCOP packer_neighbor_graph) | core::pack::rotamer_set::RotamerSets | |
| compute_energies(pose::Pose const &pose, scoring::ScoreFunction const &scfxn, graph::GraphCOP packer_neighbor_graph, interaction_graph::InteractionGraphBaseOP ig) | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
| compute_one_body_energies(pose::Pose const &pose, scoring::ScoreFunction const &scfxn, graph::GraphCOP packer_neighbor_graph, interaction_graph::InteractionGraphBaseOP ig) | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
| compute_proline_correction_energies_for_otf_graph(pose::Pose const &pose, conformation::symmetry::SymmetryInfoCOP symm_info, scoring::ScoreFunction const &scfxn, graph::GraphCOP packer_neighbor_graph, interaction_graph::SymmOnTheFlyInteractionGraphOP otfig) | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
| dump_pdb(pose::Pose const &pose, std::string const &filename) const | core::pack::rotamer_set::RotamerSets | |
| end() | core::pack::rotamer_set::RotamerSets | inlinevirtual |
| final_visit_to_edge(pose::Pose const &pose, graph::GraphCOP packer_neighbor_graph, uint ii_resid, uint jj_resid) | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
| FixbbRotamerSets() | core::pack::rotamer_set::FixbbRotamerSets | |
| get_bb_bbE(pose::Pose const &pose, scoring::ScoreFunction const &scfxn, conformation::Residue const &res1, conformation::Residue const &res2) | core::pack::rotamer_set::RotamerSets | static |
| get_sc_bbE(pose::Pose const &pose, scoring::ScoreFunction const &scfxn, conformation::Residue const &res1, conformation::Residue const &res2) | core::pack::rotamer_set::RotamerSets | static |
| moltenres_2_resid(uint) const | core::pack::rotamer_set::RotamerSets | virtual |
| moltenres_2_resid_vector() const | core::pack::rotamer_set::RotamerSets | inlinevirtual |
| moltenres_for_rotamer(uint) const | core::pack::rotamer_set::RotamerSets | virtual |
| moltenres_rotid_2_rotid(uint moltenres, uint moltenresrotid) const | core::pack::rotamer_set::RotamerSets | virtual |
| nmoltenres() const | core::pack::rotamer_set::RotamerSets | virtual |
| nrotamer_offset_for_moltenres(uint) const | core::pack::rotamer_set::RotamerSets | virtual |
| nrotamers() const | core::pack::rotamer_set::RotamerSets | virtual |
| nrotamers_for_moltenres(uint) const | core::pack::rotamer_set::RotamerSets | virtual |
| orient_rotamer_set_to_symmetric_partner(pose::Pose const &pose, uint const &setpos, uint const &symmpos) | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
| PackerTaskCOP typedef | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
| parent typedef | core::pack::rotamer_set::FixbbRotamerSets | |
| precompute_two_body_energies(pose::Pose const &pose, scoring::ScoreFunction const &scfxn, graph::GraphCOP packer_neighbor_graph, interaction_graph::PrecomputedPairEnergiesInteractionGraphOP pig, bool const finalize_edges=true) | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
| prepare_sets_for_packing(pose::Pose const &pose, scoring::ScoreFunction const &) | core::pack::rotamer_set::RotamerSets | |
| prepare_symm_otf_interaction_graph(pose::Pose const &pose, scoring::ScoreFunction const &scfxn, graph::GraphCOP packer_neighbor_graph, interaction_graph::SymmOnTheFlyInteractionGraphOP ig) | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
| res_for_rotamer(uint) const | core::pack::rotamer_set::RotamerSets | virtual |
| resid_2_moltenres(uint) const | core::pack::rotamer_set::RotamerSets | virtual |
| resid_2_moltenres_vector() const | core::pack::rotamer_set::RotamerSets | inlinevirtual |
| rotamer(uint) const | core::pack::rotamer_set::RotamerSets | virtual |
| rotamer_for_moltenres(uint moltenres_id, uint rotamerid) const | core::pack::rotamer_set::RotamerSets | virtual |
| rotamer_set_for_moltenresidue(uint moltenresid) const | core::pack::rotamer_set::RotamerSets | virtual |
| rotamer_set_for_moltenresidue(uint moltenresid) | core::pack::rotamer_set::RotamerSets | virtual |
| rotamer_set_for_residue(uint resid) const | core::pack::rotamer_set::RotamerSets | virtual |
| rotamer_set_for_residue(uint resid) | core::pack::rotamer_set::RotamerSets | virtual |
| RotamerSets() | core::pack::rotamer_set::RotamerSets | |
| RotamerSetsBase() | core::pack::rotamer_set::RotamerSetsBase | |
| RotamerSetVector typedef | core::pack::rotamer_set::FixbbRotamerSets | |
| rotid_on_moltenresidue(uint rotid) const | core::pack::rotamer_set::RotamerSets | virtual |
| set_task(task::PackerTaskCOP task) | core::pack::rotamer_set::RotamerSets | |
| SymmetricConformation typedef | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
| SymmetricRotamerSets() | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
| SymmetryInfoCOP typedef | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
| task() const | core::pack::rotamer_set::RotamerSets | |
| total_residue() const | core::pack::rotamer_set::RotamerSets | virtual |
| ~FixbbRotamerSets() | core::pack::rotamer_set::FixbbRotamerSets | virtual |
| ~RotamerSets() | core::pack::rotamer_set::RotamerSets | |
| ~RotamerSetsBase() | core::pack::rotamer_set::RotamerSetsBase | virtual |
| ~SymmetricRotamerSets() | core::pack::rotamer_set::symmetry::SymmetricRotamerSets | |
1.8.4