protocols::protein_interface_design::FavorNativeResidue Class Reference

#include <design_utils.hh>

Collaboration diagram for protocols::protein_interface_design::FavorNativeResidue:

Public Types
typedef core::pose::Pose	Pose
typedef core::Real	Real

Public Member Functions
	FavorNativeResidue (Pose &pose, Real const native_residue_bonus)
	FavorNativeResidue (Pose &pose, utility::vector1< Real > const native_residue_bonus)
virtual	~FavorNativeResidue ()

Private Member Functions
void	add_residue_constraints (Pose &pose) const

Private Attributes
utility::vector1< Real >	native_residue_bonus_

Detailed Description

class FavorNativeResidue changes a pose object so that its residue identities at the initialization of FavorNativeResidue are kept in memory. If the res_type_constraint score term is set to a value other than 0, an energy bonus will be assigned if the residue doesn't change. This is useful e.g., in design based on a native scaffold where we want a barrier to mutation.

Definition at line 108 of file design_utils.hh.

Member Typedef Documentation

typedef core::pose::Pose protocols::protein_interface_design::FavorNativeResidue::Pose

Definition at line 111 of file design_utils.hh.

typedef core::Real protocols::protein_interface_design::FavorNativeResidue::Real

Definition at line 112 of file design_utils.hh.

Constructor & Destructor Documentation

FavorNativeResidue::FavorNativeResidue	(	Pose &	pose,
		core::Real const	native_residue_bonus
	)

Definition at line 278 of file design_utils.cc.

References core::pose::Pose::total_residue().

FavorNativeResidue::FavorNativeResidue	(	Pose &	pose,
		utility::vector1< Real > const	native_residue_bonus
	)

Definition at line 288 of file design_utils.cc.

References core::pose::Pose::total_residue().

virtual protocols::protein_interface_design::FavorNativeResidue::~FavorNativeResidue ( )

inlinevirtual

Definition at line 116 of file design_utils.hh.

Member Function Documentation

void FavorNativeResidue::add_residue_constraints ( Pose &  pose) const

private

Definition at line 300 of file design_utils.cc.

References core::pose::Pose::add_constraint(), and core::pose::Pose::total_residue().

Member Data Documentation

utility::vector1< Real > protocols::protein_interface_design::FavorNativeResidue::native_residue_bonus_

private

Definition at line 119 of file design_utils.hh.

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/design_utils.hh
• src/protocols/protein_interface_design/design_utils.cc