protocols::simple_filters::InterfaceBindingEnergyDensityFilter Class Reference

#include <InterfaceBindingEnergyDensityFilter.hh>

Inheritance diagram for protocols::simple_filters::InterfaceBindingEnergyDensityFilter:

Collaboration diagram for protocols::simple_filters::InterfaceBindingEnergyDensityFilter:

Public Member Functions
	InterfaceBindingEnergyDensityFilter ()
	InterfaceBindingEnergyDensityFilter (InterfaceSasaFilterOP sasa_filter, DdgFilterOP ddG_filter, core::Real threshold)
virtual	~InterfaceBindingEnergyDensityFilter ()
void	set_interface_sasa_filter (InterfaceSasaFilterOP sasa_filter)
void	set_ddG_filter (DdgFilterOP ddG_filter)
void	set_upper_threshold (core::Real threshold)
bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const
core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
filters::FilterOP	clone () const
filters::FilterOP	fresh_instance () const
void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Attributes
InterfaceSasaFilterOP	sasa_filter_
DdgFilterOP	ddG_filter_
core::Real	upper_threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 38 of file InterfaceBindingEnergyDensityFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::InterfaceBindingEnergyDensityFilter::InterfaceBindingEnergyDensityFilter

(

)

Definition at line 53 of file InterfaceBindingEnergyDensityFilter.cc.

Referenced by clone().

protocols::simple_filters::InterfaceBindingEnergyDensityFilter::InterfaceBindingEnergyDensityFilter	(	InterfaceSasaFilterOP	sasa_filter,
		DdgFilterOP	ddG_filter,
		core::Real	threshold
	)

Definition at line 60 of file InterfaceBindingEnergyDensityFilter.cc.

protocols::simple_filters::InterfaceBindingEnergyDensityFilter::~InterfaceBindingEnergyDensityFilter ( )

virtual

Definition at line 76 of file InterfaceBindingEnergyDensityFilter.cc.

Member Function Documentation

bool protocols::simple_filters::InterfaceBindingEnergyDensityFilter::apply ( core::pose::Pose const &  pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 131 of file InterfaceBindingEnergyDensityFilter.cc.

References ddG_filter_, sasa_filter_, protocols::simple_filters::TR(), and upper_threshold_.

filters::FilterOP protocols::simple_filters::InterfaceBindingEnergyDensityFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 79 of file InterfaceBindingEnergyDensityFilter.cc.

References InterfaceBindingEnergyDensityFilter().

core::Real protocols::simple_filters::InterfaceBindingEnergyDensityFilter::compute

(

core::pose::Pose const &

pose)

const

Definition at line 167 of file InterfaceBindingEnergyDensityFilter.cc.

References ddG_filter_, and sasa_filter_.

filters::FilterOP protocols::simple_filters::InterfaceBindingEnergyDensityFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 84 of file InterfaceBindingEnergyDensityFilter.cc.

void protocols::simple_filters::InterfaceBindingEnergyDensityFilter::parse_my_tag ( utility::tag::TagPtr const  tag, protocols::moves::DataMap &  , filters::Filters_map const &  filters_map, protocols::moves::Movers_map const &  , core::pose::Pose const &    )

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 89 of file InterfaceBindingEnergyDensityFilter.cc.

References ddG_filter_, sasa_filter_, and upper_threshold_.

void protocols::simple_filters::InterfaceBindingEnergyDensityFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 149 of file InterfaceBindingEnergyDensityFilter.cc.

References ddG_filter_, and sasa_filter_.

core::Real protocols::simple_filters::InterfaceBindingEnergyDensityFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

Definition at line 158 of file InterfaceBindingEnergyDensityFilter.cc.

References ddG_filter_, and sasa_filter_.

void protocols::simple_filters::InterfaceBindingEnergyDensityFilter::set_ddG_filter

(

DdgFilterOP

ddG_filter)

Definition at line 73 of file InterfaceBindingEnergyDensityFilter.cc.

References ddG_filter_.

void protocols::simple_filters::InterfaceBindingEnergyDensityFilter::set_interface_sasa_filter

(

InterfaceSasaFilterOP

sasa_filter)

Definition at line 72 of file InterfaceBindingEnergyDensityFilter.cc.

References sasa_filter_.

void protocols::simple_filters::InterfaceBindingEnergyDensityFilter::set_upper_threshold

(

core::Real

threshold)

Definition at line 74 of file InterfaceBindingEnergyDensityFilter.cc.

References upper_threshold_.

Member Data Documentation

DdgFilterOP protocols::simple_filters::InterfaceBindingEnergyDensityFilter::ddG_filter_

private

Definition at line 71 of file InterfaceBindingEnergyDensityFilter.hh.

Referenced by apply(), compute(), parse_my_tag(), report(), report_sm(), and set_ddG_filter().

InterfaceSasaFilterOP protocols::simple_filters::InterfaceBindingEnergyDensityFilter::sasa_filter_

private

Definition at line 70 of file InterfaceBindingEnergyDensityFilter.hh.

Referenced by apply(), compute(), parse_my_tag(), report(), report_sm(), and set_interface_sasa_filter().

core::Real protocols::simple_filters::InterfaceBindingEnergyDensityFilter::upper_threshold_

private

Definition at line 73 of file InterfaceBindingEnergyDensityFilter.hh.

Referenced by apply(), parse_my_tag(), and set_upper_threshold().

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The documentation for this class was generated from the following files:

• src/protocols/simple_filters/InterfaceBindingEnergyDensityFilter.hh
• src/protocols/simple_filters/InterfaceBindingEnergyDensityFilter.cc