protocols::rna::RNA_Pairing Class Reference

#include <RNA_StructureParameters.hh>

Collaboration diagram for protocols::rna::RNA_Pairing:

Public Attributes
core::Size	pos1
core::Size	pos2
char	edge1
char	edge2
char	orientation

Detailed Description

Definition at line 41 of file RNA_StructureParameters.hh.

Member Data Documentation

char protocols::rna::RNA_Pairing::edge1

Definition at line 45 of file RNA_StructureParameters.hh.

Referenced by protocols::rna::RNA_StructureParameters::add_new_RNA_jump(), protocols::rna::RNA_StructureParameters::append_virtual_anchor(), protocols::rna::RNA_StructureParameters::check_base_pairs(), protocols::rna::RNA_StructureParameters::get_pairings_from_line(), protocols::rna::RNA_StructureParameters::get_stem_residues(), protocols::rna::RNA_StructureParameters::initialize_secstruct(), and protocols::rna::RNA_StructureParameters::setup_base_pair_constraints().

char protocols::rna::RNA_Pairing::edge2

Definition at line 46 of file RNA_StructureParameters.hh.

Referenced by protocols::rna::RNA_StructureParameters::add_new_RNA_jump(), protocols::rna::RNA_StructureParameters::append_virtual_anchor(), protocols::rna::RNA_StructureParameters::check_base_pairs(), protocols::rna::RNA_StructureParameters::get_pairings_from_line(), protocols::rna::RNA_StructureParameters::get_stem_residues(), protocols::rna::RNA_StructureParameters::initialize_secstruct(), and protocols::rna::RNA_StructureParameters::setup_base_pair_constraints().

char protocols::rna::RNA_Pairing::orientation

Definition at line 47 of file RNA_StructureParameters.hh.

Referenced by protocols::rna::RNA_StructureParameters::add_new_RNA_jump(), protocols::rna::RNA_StructureParameters::append_virtual_anchor(), protocols::rna::RNA_StructureParameters::check_base_pairs(), protocols::rna::RNA_StructureParameters::get_pairings_from_line(), protocols::rna::RNA_StructureParameters::get_stem_residues(), protocols::rna::RNA_StructureParameters::initialize_secstruct(), and protocols::rna::RNA_StructureParameters::setup_base_pair_constraints().

core::Size protocols::rna::RNA_Pairing::pos1

Definition at line 43 of file RNA_StructureParameters.hh.

Referenced by protocols::rna::RNA_StructureParameters::add_new_RNA_jump(), protocols::rna::RNA_StructureParameters::append_virtual_anchor(), protocols::rna::RNA_StructureParameters::check_base_pairs(), protocols::rna::RNA_StructureParameters::connections(), protocols::rna::RNA_StructureParameters::get_pairings_from_line(), protocols::rna::RNA_StructureParameters::get_stem_residues(), protocols::rna::RNA_StructureParameters::initialize_secstruct(), and protocols::rna::RNA_StructureParameters::setup_base_pair_constraints().

core::Size protocols::rna::RNA_Pairing::pos2

Definition at line 44 of file RNA_StructureParameters.hh.

Referenced by protocols::rna::RNA_StructureParameters::add_new_RNA_jump(), protocols::rna::RNA_StructureParameters::append_virtual_anchor(), protocols::rna::RNA_StructureParameters::check_base_pairs(), protocols::rna::RNA_StructureParameters::connections(), protocols::rna::RNA_StructureParameters::get_pairings_from_line(), protocols::rna::RNA_StructureParameters::get_stem_residues(), protocols::rna::RNA_StructureParameters::initialize_secstruct(), and protocols::rna::RNA_StructureParameters::setup_base_pair_constraints().

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The documentation for this class was generated from the following file:

• src/protocols/rna/RNA_StructureParameters.hh