| chunk_ | protocols::frag_picker::FragmentCandidate | protected |
| FragmentCandidate(Size queryPosition, Size inChunkPosition, VallChunkOP chunk, Size fragmentLength) | protocols::frag_picker::FragmentCandidate | inline |
| fragmentLength_ | protocols::frag_picker::FragmentCandidate | protected |
| get_chain_id() const | protocols::frag_picker::FragmentCandidate | inline |
| get_chunk() const | protocols::frag_picker::FragmentCandidate | inline |
| get_first_index_in_query() const | protocols::frag_picker::FragmentCandidate | inline |
| get_first_index_in_vall() const | protocols::frag_picker::FragmentCandidate | inline |
| get_frag_data() | protocols::frag_picker::FragmentCandidate | inline |
| get_length() const | protocols::frag_picker::FragmentCandidate | inline |
| get_middle_residue() const | protocols::frag_picker::FragmentCandidate | inline |
| get_middle_ss() const | protocols::frag_picker::FragmentCandidate | inline |
| get_pdb_id() const | protocols::frag_picker::FragmentCandidate | inline |
| get_pool_name() | protocols::frag_picker::FragmentCandidate | inline |
| get_query_middle_res_id() | protocols::frag_picker::FragmentCandidate | inline |
| get_residue(Size whichOne) const | protocols::frag_picker::FragmentCandidate | inline |
| get_vall_middle_res_id() | protocols::frag_picker::FragmentCandidate | inline |
| key() const | protocols::frag_picker::FragmentCandidate | inline |
| output_silent(core::io::silent::SilentFileData &sfd, const std::string sequence, const std::string silent_file_name, const std::string tag, scores::FragmentScoreMapOP sc, scores::FragmentScoreManagerOP ms) | protocols::frag_picker::FragmentCandidate | |
| pool_name_ | protocols::frag_picker::FragmentCandidate | private |
| print_fragment(std::ostream &out, scores::FragmentScoreMapOP sc=NULL, scores::FragmentScoreManagerOP ms=NULL) | protocols::frag_picker::FragmentCandidate | |
| print_fragment_seq(std::ostream &out) | protocols::frag_picker::FragmentCandidate | |
| queryResidueIndex_ | protocols::frag_picker::FragmentCandidate | protected |
| same_chain(FragmentCandidateCOP fr) | protocols::frag_picker::FragmentCandidate | |
| sequence() | protocols::frag_picker::FragmentCandidate | inline |
| set_pool_name(std::string pool_name) | protocols::frag_picker::FragmentCandidate | inline |
| unknown_pool_name_ | protocols::frag_picker::FragmentCandidate | privatestatic |
| vallResidueIndex_ | protocols::frag_picker::FragmentCandidate | protected |
| ~FragmentCandidate() | protocols::frag_picker::FragmentCandidate | inlinevirtual |
1.8.4