#include <InterfaceSasaFilter.hh>

Inheritance diagram for protocols::simple_filters::InterfaceSasaFilter:

Collaboration diagram for protocols::simple_filters::InterfaceSasaFilter:

Public Member Functions
	InterfaceSasaFilter ()

	InterfaceSasaFilter (core::Real const lower_threshold, bool const hydrophobic=false, bool const polar=false, core::Real const upper_threshold=100000000.0, std::string const sym_dof_names="")

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const

core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

filters::FilterOP	clone () const

filters::FilterOP	fresh_instance () const

virtual	~InterfaceSasaFilter ()

void	jump (core::Size const jump)

void	add_jump (core::Size const jump)

void	jumps (utility::vector1< core::Size > const jumps)

void	sym_dof_names (std::string const sym_dof_names)

void	sym_dof_names (utility::vector1< std::string > const sym_dof_names)

void	add_sym_dof_name (std::string const sym_dof_name)

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual std::string	name () const

Private Attributes
core::Real	lower_threshold_

core::Real	upper_threshold_

bool	hydrophobic_

bool	polar_

utility::vector1< core::Size >	jumps_
	count only hydrophobics? polars? More...

utility::vector1< std::string >	sym_dof_names_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 30 of file InterfaceSasaFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::InterfaceSasaFilter::InterfaceSasaFilter ( )

Definition at line 52 of file InterfaceSasaFilter.cc.

References jump().

Referenced by clone(), and fresh_instance().

protocols::simple_filters::InterfaceSasaFilter::InterfaceSasaFilter	(	core::Real const	lower_threshold,
		bool const	hydrophobic = `false`,
		bool const	polar = `false`,
		core::Real const	upper_threshold = `100000000.0`,
		std::string const	sym_dof_names = `""`
	)

Definition at line 64 of file InterfaceSasaFilter.cc.

References jump(), and sym_dof_names().

protocols::simple_filters::InterfaceSasaFilter::~InterfaceSasaFilter ( )

virtual

Definition at line 83 of file InterfaceSasaFilter.cc.

Member Function Documentation

void protocols::simple_filters::InterfaceSasaFilter::add_jump ( core::Size const jump)

Definition at line 229 of file InterfaceSasaFilter.cc.

References jumps_.

void protocols::simple_filters::InterfaceSasaFilter::add_sym_dof_name ( std::string const sym_dof_name)

Definition at line 247 of file InterfaceSasaFilter.cc.

References sym_dof_names_.

bool protocols::simple_filters::InterfaceSasaFilter::apply ( core::pose::Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 194 of file InterfaceSasaFilter.cc.

References compute(), and lower_threshold_.

filters::FilterOP protocols::simple_filters::InterfaceSasaFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 86 of file InterfaceSasaFilter.cc.

References InterfaceSasaFilter().

core::Real protocols::simple_filters::InterfaceSasaFilter::compute ( core::pose::Pose const & pose) const

Definition at line 259 of file InterfaceSasaFilter.cc.

References core::pose::symmetry::get_sym_aware_jump_num(), hydrophobic_, core::pose::symmetry::is_symmetric(), jumps_, core::pose::Pose::metric(), core::pose::Pose::residue(), core::pose::symmetry::sym_dof_jump_num(), sym_dof_names_, core::pose::symmetry::symmetry_info(), core::pose::Pose::total_residue(), and protocols::swa::translate().

Referenced by apply(), protocols::protein_interface_design::filters::AtomicContactCountFilter::compute(), report(), and report_sm().

filters::FilterOP protocols::simple_filters::InterfaceSasaFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 91 of file InterfaceSasaFilter.cc.

References InterfaceSasaFilter().

void protocols::simple_filters::InterfaceSasaFilter::jump ( core::Size const jump)

Definition at line 221 of file InterfaceSasaFilter.cc.

References jumps_, and sym_dof_names_.

Referenced by InterfaceSasaFilter(), and parse_def().

void protocols::simple_filters::InterfaceSasaFilter::jumps ( utility::vector1< core::Size > const jumps)

Definition at line 234 of file InterfaceSasaFilter.cc.

References jumps_.

Referenced by protocols::protein_interface_design::filters::AtomicContactCountFilter::compute().

void protocols::simple_filters::InterfaceSasaFilter::parse_def	(	utility::lua::LuaObject const &	def,
		utility::lua::LuaObject const &	score_fxns,
		utility::lua::LuaObject const &	tasks
	)

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 166 of file InterfaceSasaFilter.cc.

References hydrophobic_, jump(), jumps_, and lower_threshold_.

void protocols::simple_filters::InterfaceSasaFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	,
		filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)