core::scoring::PeptideBondedNeighborIterator Class Reference

#include <PeptideBondedEnergyContainer.hh>

Inheritance diagram for core::scoring::PeptideBondedNeighborIterator:

Collaboration diagram for core::scoring::PeptideBondedNeighborIterator:

Public Member Functions
virtual	~PeptideBondedNeighborIterator ()
	PeptideBondedNeighborIterator (Size const base_in, Size const pos_in, utility::vector1< ScoreType > const st, utility::vector1< utility::vector1< Real > > *table_in, utility::vector1< bool > *computed_in)
virtual ResidueNeighborIterator const &	operator= (ResidueNeighborIterator const &src)
virtual ResidueNeighborIterator const &	operator++ ()
virtual bool	operator== (ResidueNeighborIterator const &other) const
virtual bool	operator!= (ResidueNeighborIterator const &other) const
virtual Size	upper_neighbor_id () const
virtual Size	lower_neighbor_id () const
virtual Size	residue_iterated_on () const
virtual Size	neighbor_id () const
virtual void	save_energy (EnergyMap const &emap)
virtual void	retrieve_energy (EnergyMap &emap) const
virtual void	accumulate_energy (EnergyMap &emap) const
virtual void	mark_energy_computed ()
virtual void	mark_energy_uncomputed ()
virtual bool	energy_computed () const
Public Member Functions inherited from core::scoring::ResidueNeighborIterator
virtual	~ResidueNeighborIterator ()

Private Attributes
Size	base_
Size	pos_
utility::vector1< ScoreType >	score_types_
utility::vector1 < utility::vector1< Real > > *	tables_
utility::vector1< bool > *	computed_

Detailed Description

Definition at line 34 of file PeptideBondedEnergyContainer.hh.

Constructor & Destructor Documentation

virtual core::scoring::PeptideBondedNeighborIterator::~PeptideBondedNeighborIterator ( )

inlinevirtual

Definition at line 37 of file PeptideBondedEnergyContainer.hh.

core::scoring::PeptideBondedNeighborIterator::PeptideBondedNeighborIterator ( Size const  base_in, Size const  pos_in, utility::vector1< ScoreType > const  st, utility::vector1< utility::vector1< Real > > *  table_in, utility::vector1< bool > *  computed_in  )

inline

Definition at line 39 of file PeptideBondedEnergyContainer.hh.

Member Function Documentation

virtual void core::scoring::PeptideBondedNeighborIterator::accumulate_energy ( EnergyMap &  emap) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 109 of file PeptideBondedEnergyContainer.hh.

References base_, pos_, score_types_, and tables_.

virtual bool core::scoring::PeptideBondedNeighborIterator::energy_computed ( ) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 122 of file PeptideBondedEnergyContainer.hh.

References base_, computed_, and pos_.

virtual Size core::scoring::PeptideBondedNeighborIterator::lower_neighbor_id ( ) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 84 of file PeptideBondedEnergyContainer.hh.

References base_, and pos_.

virtual void core::scoring::PeptideBondedNeighborIterator::mark_energy_computed ( )

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 114 of file PeptideBondedEnergyContainer.hh.

References base_, and pos_.

virtual void core::scoring::PeptideBondedNeighborIterator::mark_energy_uncomputed ( )

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 118 of file PeptideBondedEnergyContainer.hh.

References base_, and pos_.

virtual Size core::scoring::PeptideBondedNeighborIterator::neighbor_id ( ) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 92 of file PeptideBondedEnergyContainer.hh.

References pos_.

Referenced by operator==().

virtual bool core::scoring::PeptideBondedNeighborIterator::operator!= ( ResidueNeighborIterator const &  other) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 75 of file PeptideBondedEnergyContainer.hh.

virtual ResidueNeighborIterator const& core::scoring::PeptideBondedNeighborIterator::operator++ ( )

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 63 of file PeptideBondedEnergyContainer.hh.

References base_, and pos_.

virtual ResidueNeighborIterator const& core::scoring::PeptideBondedNeighborIterator::operator= ( ResidueNeighborIterator const &  src)

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 53 of file PeptideBondedEnergyContainer.hh.

References base_, computed_, pos_, and tables_.

virtual bool core::scoring::PeptideBondedNeighborIterator::operator== ( ResidueNeighborIterator const &  other) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 69 of file PeptideBondedEnergyContainer.hh.

References core::scoring::ResidueNeighborIterator::neighbor_id(), neighbor_id(), core::scoring::ResidueNeighborIterator::residue_iterated_on(), and residue_iterated_on().

virtual Size core::scoring::PeptideBondedNeighborIterator::residue_iterated_on ( ) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 88 of file PeptideBondedEnergyContainer.hh.

References base_.

Referenced by operator==().

virtual void core::scoring::PeptideBondedNeighborIterator::retrieve_energy ( EnergyMap &  emap) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 104 of file PeptideBondedEnergyContainer.hh.

References base_, pos_, score_types_, and tables_.

virtual void core::scoring::PeptideBondedNeighborIterator::save_energy ( EnergyMap const &  emap)

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 96 of file PeptideBondedEnergyContainer.hh.

References base_, pos_, and score_types_.

virtual Size core::scoring::PeptideBondedNeighborIterator::upper_neighbor_id ( ) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 80 of file PeptideBondedEnergyContainer.hh.

References base_, and pos_.

Member Data Documentation

Size core::scoring::PeptideBondedNeighborIterator::base_

private

Definition at line 127 of file PeptideBondedEnergyContainer.hh.

Referenced by accumulate_energy(), energy_computed(), lower_neighbor_id(), mark_energy_computed(), mark_energy_uncomputed(), operator++(), operator=(), residue_iterated_on(), retrieve_energy(), save_energy(), and upper_neighbor_id().

utility::vector1< bool >* core::scoring::PeptideBondedNeighborIterator::computed_

private

Definition at line 131 of file PeptideBondedEnergyContainer.hh.

Referenced by energy_computed(), and operator=().

Size core::scoring::PeptideBondedNeighborIterator::pos_

private

Definition at line 128 of file PeptideBondedEnergyContainer.hh.

Referenced by accumulate_energy(), energy_computed(), lower_neighbor_id(), mark_energy_computed(), mark_energy_uncomputed(), neighbor_id(), operator++(), operator=(), retrieve_energy(), save_energy(), and upper_neighbor_id().

utility::vector1< ScoreType > core::scoring::PeptideBondedNeighborIterator::score_types_

private

Definition at line 129 of file PeptideBondedEnergyContainer.hh.

Referenced by accumulate_energy(), retrieve_energy(), and save_energy().

utility::vector1< utility::vector1< Real > >* core::scoring::PeptideBondedNeighborIterator::tables_

private

Definition at line 130 of file PeptideBondedEnergyContainer.hh.

Referenced by accumulate_energy(), operator=(), and retrieve_energy().

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The documentation for this class was generated from the following file:

• src/core/scoring/PeptideBondedEnergyContainer.hh