LoopMoverFromCommandLine.hh

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// vi: set ts=2 noet:
//
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/// @file protocols/movers/LoopMoverFromCommandLine.hh
/// @brief Header for parseable class to build loops from command line
/// @author Jordan Willis(Jordan.r.willis@vanderbilt.edu)

#ifndef INCLUDED_protocols_protein_interface_design_movers_LoopMoverFromCommandLine_HH
#define INCLUDED_protocols_protein_interface_design_movers_LoopMoverFromCommandLine_HH

#include <core/pose/Pose.fwd.hh>
#include <protocols/moves/DataMap.fwd.hh>
#include <utility/tag/Tag.fwd.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <core/types.hh>
// AUTO-REMOVED #include <core/scoring/ScoreFunction.hh>
// AUTO-REMOVED #include <core/fragment/FragSet.fwd.hh>
// AUTO-REMOVED #include <protocols/loops/Loops.hh>
#include <protocols/protein_interface_design/movers/LoopMoverFromCommandLine.fwd.hh>

#include <protocols/filters/Filter.fwd.hh>

#include <protocols/loops/Loops.fwd.hh>
#include <utility/vector1.hh>

//Auto Headers
#include <protocols/simple_moves/DesignRepackMover.hh>


namespace protocols {
namespace protein_interface_design {
namespace movers {

class LoopMoverFromCommandLine : public protocols::simple_moves::DesignRepackMover
{
public:
    LoopMoverFromCommandLine();
    LoopMoverFromCommandLine(
          std::string const protocol,
          bool const perturb,
          bool const refine,
          core::scoring::ScoreFunctionOP & hires_score,
          core::scoring::ScoreFunctionOP & lores_score,
          std::string const loop_file_name,
          protocols::loops::LoopsCOP loops
          );
    // various setters and getters
    bool perturb() const { return perturb_;}
    void perturb( bool const setting ) { perturb_ = setting; }
    bool refine() const { return refine_; }
    void refine( bool const setting ) { refine_ = setting; }
    void refine( std::string const setting ){ string_refine_ = setting; }
//    void string_refine( std::string const setting ){ string_refine_ = setting;}
    std::string string_refine() const{ return string_refine_; }
    void intermedrelax( std::string const setting ){ intermedrelax_ = setting;}
    std::string intermedrelax() const{ return intermedrelax_; }
    void relax( std::string const setting ){ relax_ = setting; }
    std::string relax() const{ return relax_; }
    void remodel( std::string const setting ){ remodel_ = setting; }
    std::string remodel() const{ return remodel_; }
    protocols::moves::MoverOP clone() const;
    protocols::moves::MoverOP fresh_instance() const { return protocols::moves::MoverOP( new LoopMoverFromCommandLine ); }
    void apply( core::pose::Pose & pose );
    virtual std::string get_name() const;
    void parse_my_tag( utility::tag::TagPtr const tag, protocols::moves::DataMap & data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const & );
    virtual ~LoopMoverFromCommandLine();

private:
    std::string protocol_;
    core::scoring::ScoreFunctionOP hires_score_, lores_score_;
    bool perturb_, refine_;
    std::string loop_file_name_;
    protocols::loops::LoopsOP loops_;
    std::string intermedrelax_, remodel_, relax_, string_refine_;
};

} //moves
} //protocols
}

#endif