protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator Class Reference

#include <ResidueDecompositionByChainCalculator.hh>

Inheritance diagram for protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator:

Collaboration diagram for protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator:

Public Member Functions
	ResidueDecompositionByChainCalculator ()
	ResidueDecompositionByChainCalculator (ResidueDecompositionByChainCalculator const &calculator)
virtual core::pose::metrics::PoseMetricCalculatorOP	clone () const
utility::vector1< std::set < char > > const &	chain_letters () const
void	chain_letters (utility::vector1< std::set< char > > const &chain_letters)
utility::vector1< std::set < core::Size > > const &	chain_numbers () const
void	chain_numbers (utility::vector1< std::set< core::Size > > const &chain_numbers)
bool	use_numbers () const
void	use_numbers (bool use_numbers)

Protected Member Functions
virtual void	recompute (core::pose::Pose const &this_pose)
Protected Member Functions inherited from protocols::toolbox::pose_metric_calculators::ResidueDecompositionCalculator
	ResidueDecompositionCalculator ()
	ResidueDecompositionCalculator (ResidueDecompositionCalculator const &calculator)
virtual std::string	print (std::string const &key) const
virtual void	lookup (std::string const &key, basic::MetricValueBase *valptr) const
void	residue_decomposition_to_set_numbers (core::pose::Pose const &this_pose)
void	residue_set_numbers_to_decomposition ()
utility::vector1< std::set < core::Size > > const &	residue_decomposition () const
utility::vector1< core::Size > const &	residue_set_numbers () const

Protected Attributes
utility::vector1< std::set < char > >	chain_letters_
utility::vector1< std::set < core::Size > >	chain_numbers_
bool	use_numbers_
Protected Attributes inherited from protocols::toolbox::pose_metric_calculators::ResidueDecompositionCalculator
utility::vector1< std::set < core::Size > >	residue_decomposition_
utility::vector1< core::Size >	residue_set_numbers_
utility::vector1< std::string >	set_names_

Detailed Description

Definition at line 30 of file ResidueDecompositionByChainCalculator.hh.

Constructor & Destructor Documentation

protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::ResidueDecompositionByChainCalculator

(

)

Definition at line 37 of file ResidueDecompositionByChainCalculator.cc.

Referenced by clone().

protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::ResidueDecompositionByChainCalculator

(

ResidueDecompositionByChainCalculator const &

calculator)

Definition at line 43 of file ResidueDecompositionByChainCalculator.cc.

Member Function Documentation

utility::vector1<std::set<char> > const& protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::chain_letters ( ) const

inline

Definition at line 45 of file ResidueDecompositionByChainCalculator.hh.

References chain_letters_.

Referenced by chain_letters().

void protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::chain_letters ( utility::vector1< std::set< char > > const &  chain_letters)

inline

Definition at line 50 of file ResidueDecompositionByChainCalculator.hh.

References chain_letters(), chain_letters_, and use_numbers_.

utility::vector1<std::set<core::Size> > const& protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::chain_numbers ( ) const

inline

Definition at line 56 of file ResidueDecompositionByChainCalculator.hh.

References chain_numbers_.

Referenced by chain_numbers().

void protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::chain_numbers ( utility::vector1< std::set< core::Size > > const &  chain_numbers)

inline

Definition at line 61 of file ResidueDecompositionByChainCalculator.hh.

References chain_numbers(), chain_numbers_, and use_numbers_.

core::pose::metrics::PoseMetricCalculatorOP protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::clone ( ) const

virtual

Implements protocols::toolbox::pose_metric_calculators::ResidueDecompositionCalculator.

Definition at line 54 of file ResidueDecompositionByChainCalculator.cc.

References ResidueDecompositionByChainCalculator().

void protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::recompute ( core::pose::Pose const &  this_pose)

protectedvirtual

Implements protocols::toolbox::pose_metric_calculators::ResidueDecompositionCalculator.

Definition at line 59 of file ResidueDecompositionByChainCalculator.cc.

References core::pose::Pose::chain(), chain_letters_, chain_numbers_, core::pose::Pose::conformation(), core::conformation::Conformation::num_chains(), core::pose::Pose::pdb_info(), protocols::toolbox::pose_metric_calculators::ResidueDecompositionCalculator::residue_decomposition_, protocols::toolbox::pose_metric_calculators::ResidueDecompositionCalculator::residue_set_numbers_, protocols::toolbox::pose_metric_calculators::ResidueDecompositionCalculator::set_names_, core::pose::Pose::total_residue(), and use_numbers_.

bool protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::use_numbers ( ) const

inline

Definition at line 67 of file ResidueDecompositionByChainCalculator.hh.

References use_numbers_.

Referenced by use_numbers().

void protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::use_numbers ( bool  use_numbers)

inline

Definition at line 72 of file ResidueDecompositionByChainCalculator.hh.

References use_numbers(), and use_numbers_.

Member Data Documentation

utility::vector1<std::set<char> > protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::chain_letters_

protected

Definition at line 82 of file ResidueDecompositionByChainCalculator.hh.

Referenced by chain_letters(), and recompute().

utility::vector1<std::set<core::Size> > protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::chain_numbers_

protected

Definition at line 83 of file ResidueDecompositionByChainCalculator.hh.

Referenced by chain_numbers(), and recompute().

bool protocols::toolbox::pose_metric_calculators::ResidueDecompositionByChainCalculator::use_numbers_

protected

Definition at line 84 of file ResidueDecompositionByChainCalculator.hh.

Referenced by chain_letters(), chain_numbers(), recompute(), and use_numbers().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/pose_metric_calculators/ResidueDecompositionByChainCalculator.hh
• src/protocols/toolbox/pose_metric_calculators/ResidueDecompositionByChainCalculator.cc