| apply(core::pose::Pose &pose) | protocols::analysis::InterfaceAnalyzerMover | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| BuriedUnsatisfiedPolars_ | protocols::analysis::InterfaceAnalyzerMover | private |
| calc_centroid_dG(core::pose::Pose complex_pose, core::pose::Pose separated_pose) | protocols::analysis::InterfaceAnalyzerMover | private |
| calc_hbond_sasaE(core::pose::Pose pose) | protocols::analysis::InterfaceAnalyzerMover | private |
| calc_hbond_sasaE_ | protocols::analysis::InterfaceAnalyzerMover | private |
| calc_per_residue_energy(core::pose::Pose pose) | protocols::analysis::InterfaceAnalyzerMover | private |
| calcs_ready_ | protocols::analysis::InterfaceAnalyzerMover | private |
| centroid_dG_ | protocols::analysis::InterfaceAnalyzerMover | private |
| chain1_ | protocols::analysis::InterfaceAnalyzerMover | private |
| chain1_char_ | protocols::analysis::InterfaceAnalyzerMover | private |
| chain2_ | protocols::analysis::InterfaceAnalyzerMover | private |
| chain2_char_ | protocols::analysis::InterfaceAnalyzerMover | private |
| chain_groups_ | protocols::analysis::InterfaceAnalyzerMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::analysis::InterfaceAnalyzerMover | virtual |
| complex_energy_ | protocols::analysis::InterfaceAnalyzerMover | private |
| compute_interface_delta_hbond_unsat(core::pose::Pose &complexed_pose, core::pose::Pose &separated_pose) | protocols::analysis::InterfaceAnalyzerMover | virtual |
| compute_interface_delta_hbond_unsat_ | protocols::analysis::InterfaceAnalyzerMover | private |
| compute_interface_energy(core::pose::Pose &complexed_pose, core::pose::Pose &separated_pose) | protocols::analysis::InterfaceAnalyzerMover | virtual |
| compute_interface_energy_ | protocols::analysis::InterfaceAnalyzerMover | private |
| compute_interface_packstat(core::pose::Pose &pose) | protocols::analysis::InterfaceAnalyzerMover | virtual |
| compute_interface_sc(core::Size &interface_jump, core::pose::Pose const &complexed_pose) | protocols::analysis::InterfaceAnalyzerMover | private |
| compute_interface_sc_ | protocols::analysis::InterfaceAnalyzerMover | private |
| compute_packstat_ | protocols::analysis::InterfaceAnalyzerMover | private |
| compute_separated_sasa(core::pose::Pose &complexed_pose, core::pose::Pose &separated_pose) | protocols::analysis::InterfaceAnalyzerMover | virtual |
| compute_separated_sasa_ | protocols::analysis::InterfaceAnalyzerMover | private |
| create() | protocols::moves::Mover | virtual |
| crossterm_interface_energy_ | protocols::analysis::InterfaceAnalyzerMover | private |
| crossterm_interface_energy_ratio_ | protocols::analysis::InterfaceAnalyzerMover | private |
| ddG_ | protocols::analysis::InterfaceAnalyzerMover | private |
| delta_unsat_hbond_counter_ | protocols::analysis::InterfaceAnalyzerMover | private |
| downstream_chains_ | protocols::analysis::InterfaceAnalyzerMover | private |
| Filters_map typedef | protocols::moves::Mover | |
| fixed_chains_ | protocols::analysis::InterfaceAnalyzerMover | private |
| fresh_instance() const | protocols::analysis::InterfaceAnalyzerMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_centroid_dG() | protocols::analysis::InterfaceAnalyzerMover | |
| get_chain_groups() | protocols::analysis::InterfaceAnalyzerMover | |
| get_complex_energy() | protocols::analysis::InterfaceAnalyzerMover | |
| get_crossterm_interface_energy() | protocols::analysis::InterfaceAnalyzerMover | |
| get_crossterm_interface_energy_ratio() | protocols::analysis::InterfaceAnalyzerMover | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_fixed_chains() | protocols::analysis::InterfaceAnalyzerMover | |
| get_gly_interface_energy() | protocols::analysis::InterfaceAnalyzerMover | |
| get_input_pose() const | protocols::moves::Mover | |
| get_interface_ddG() const | protocols::analysis::InterfaceAnalyzerMover | |
| get_interface_delta_hbond_unsat() | protocols::analysis::InterfaceAnalyzerMover | |
| get_interface_delta_sasa() | protocols::analysis::InterfaceAnalyzerMover | |
| get_interface_packstat() | protocols::analysis::InterfaceAnalyzerMover | |
| get_interface_set() | protocols::analysis::InterfaceAnalyzerMover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_multichain_constructor() | protocols::analysis::InterfaceAnalyzerMover | |
| get_name() const | protocols::analysis::InterfaceAnalyzerMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_num_interface_residues() | protocols::analysis::InterfaceAnalyzerMover | |
| get_pack_input() | protocols::analysis::InterfaceAnalyzerMover | |
| get_packer_task() | protocols::analysis::InterfaceAnalyzerMover | |
| get_per_residue_energy() | protocols::analysis::InterfaceAnalyzerMover | |
| get_pymol_sel_hbond_unsat() | protocols::analysis::InterfaceAnalyzerMover | |
| get_pymol_sel_interface() | protocols::analysis::InterfaceAnalyzerMover | |
| get_pymol_sel_packing() | protocols::analysis::InterfaceAnalyzerMover | |
| get_separated_interface_energy() | protocols::analysis::InterfaceAnalyzerMover | |
| get_separated_interface_energy_ratio() | protocols::analysis::InterfaceAnalyzerMover | |
| get_side1_nres() | protocols::analysis::InterfaceAnalyzerMover | inline |
| get_side1_score() | protocols::analysis::InterfaceAnalyzerMover | inline |
| get_side2_nres() | protocols::analysis::InterfaceAnalyzerMover | inline |
| get_side2_score() | protocols::analysis::InterfaceAnalyzerMover | inline |
| get_total_Hbond_E() | protocols::analysis::InterfaceAnalyzerMover | |
| get_total_sasa() | protocols::analysis::InterfaceAnalyzerMover | |
| get_type() const | protocols::moves::Mover | inline |
| get_use_centroid_dG() const | protocols::analysis::InterfaceAnalyzerMover | |
| get_use_resfile() const | protocols::analysis::InterfaceAnalyzerMover | |
| gly_dG_ | protocols::analysis::InterfaceAnalyzerMover | private |
| group_pair typedef | protocols::analysis::InterfaceAnalyzerMover | |
| group_set typedef | protocols::analysis::InterfaceAnalyzerMover | |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| interface_delta_sasa_ | protocols::analysis::InterfaceAnalyzerMover | private |
| interface_hsasa_ | protocols::analysis::InterfaceAnalyzerMover | private |
| interface_jump_ | protocols::analysis::InterfaceAnalyzerMover | private |
| interface_packstat_ | protocols::analysis::InterfaceAnalyzerMover | private |
| interface_polar_sasa_ | protocols::analysis::InterfaceAnalyzerMover | private |
| interface_set_ | protocols::analysis::InterfaceAnalyzerMover | private |
| InterfaceAnalyzerMover(core::Size interface_jump=1, bool const tracer=false, core::scoring::ScoreFunctionCOP sf=NULL, bool compute_packstat=false, bool pack_input=false, bool pack_separated=false, bool use_jobname=true) | protocols::analysis::InterfaceAnalyzerMover | |
| InterfaceAnalyzerMover(std::set< int > fixed_chains, bool const tracer=false, core::scoring::ScoreFunctionCOP sf=NULL, bool compute_packstat=false, bool pack_input=false, bool pack_separated=false, bool use_jobname=true) | protocols::analysis::InterfaceAnalyzerMover | |
| InterfaceDeltaEnergetics_ | protocols::analysis::InterfaceAnalyzerMover | private |
| InterfaceNeighborDefinition_ | protocols::analysis::InterfaceAnalyzerMover | private |
| InterfaceSasaDefinition_ | protocols::analysis::InterfaceAnalyzerMover | private |
| InterGroupNeighborsCalculator_ | protocols::analysis::InterfaceAnalyzerMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| make_interface_set(core::pose::Pose &pose) | protocols::analysis::InterfaceAnalyzerMover | virtual |
| make_multichain_interface_set(core::pose::Pose &Pose, std::set< int > &fixed_chains) | protocols::analysis::InterfaceAnalyzerMover | virtual |
| make_separated_pose(core::pose::Pose &pose) | protocols::analysis::InterfaceAnalyzerMover | virtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| multichain_constructor_ | protocols::analysis::InterfaceAnalyzerMover | private |
| mut_to_gly(core::pose::Pose complex_pose, core::pose::Pose separated_pose) | protocols::analysis::InterfaceAnalyzerMover | private |
| n_interface_res_ | protocols::analysis::InterfaceAnalyzerMover | private |
| name() | protocols::moves::Mover | inlinestatic |
| nres_ | protocols::analysis::InterfaceAnalyzerMover | private |
| NumberHBonds_ | protocols::analysis::InterfaceAnalyzerMover | private |
| one_group typedef | protocols::analysis::InterfaceAnalyzerMover | |
| operator=(Mover const &other) | protocols::moves::Mover | |
| pack_input_ | protocols::analysis::InterfaceAnalyzerMover | private |
| pack_separated_ | protocols::analysis::InterfaceAnalyzerMover | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(utility::tag::TagPtr const, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) | protocols::analysis::InterfaceAnalyzerMover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| per_residue_energy_ | protocols::analysis::InterfaceAnalyzerMover | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| posename_ | protocols::analysis::InterfaceAnalyzerMover | private |
| posename_base_ | protocols::analysis::InterfaceAnalyzerMover | private |
| print_pymol_selection_of_hbond_unsat(core::pose::Pose &pose, utility::vector1< core::id::AtomID > delta_unsat_hbond_atid_vector) | protocols::analysis::InterfaceAnalyzerMover | private |
| print_pymol_selection_of_interface_residues(core::pose::Pose const &pose, std::set< core::Size > const interface_set) | protocols::analysis::InterfaceAnalyzerMover | private |
| print_pymol_selection_of_packing(core::pose::Pose const &pose, utility::vector1< core::Real > interface_pack_scores) | protocols::analysis::InterfaceAnalyzerMover | private |
| pymol_sel_hbond_unsat_ | protocols::analysis::InterfaceAnalyzerMover | private |
| pymol_sel_interface_ | protocols::analysis::InterfaceAnalyzerMover | private |
| pymol_sel_packing_ | protocols::analysis::InterfaceAnalyzerMover | private |
| register_calculators() | protocols::analysis::InterfaceAnalyzerMover | private |
| register_intergroup_calculator() | protocols::analysis::InterfaceAnalyzerMover | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reorder_foldtree_find_jump(core::pose::Pose &pose, std::set< int > &fixed_chains) | protocols::analysis::InterfaceAnalyzerMover | virtual |
| report_data() | protocols::analysis::InterfaceAnalyzerMover | virtual |
| reset_status() | protocols::moves::Mover | |
| Sasa_ | protocols::analysis::InterfaceAnalyzerMover | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| sc_value_ | protocols::analysis::InterfaceAnalyzerMover | private |
| score_separated_chains(core::pose::Pose &complexed_pose, core::pose::Pose &separated_pose) | protocols::analysis::InterfaceAnalyzerMover | virtual |
| separated_interface_energy_ | protocols::analysis::InterfaceAnalyzerMover | private |
| separated_interface_energy_ratio_ | protocols::analysis::InterfaceAnalyzerMover | private |
| set_calc_hbond_sasaE(bool const calc_hbond_sasaE) | protocols::analysis::InterfaceAnalyzerMover | inline |
| set_compute_interface_delta_hbond_unsat(bool const IDHU) | protocols::analysis::InterfaceAnalyzerMover | inline |
| set_compute_interface_energy(bool const iface_en) | protocols::analysis::InterfaceAnalyzerMover | inline |
| set_compute_interface_sc(bool const compute_interface_sc) | protocols::analysis::InterfaceAnalyzerMover | inline |
| set_compute_packstat(bool const compute_packstat) | protocols::analysis::InterfaceAnalyzerMover | |
| set_compute_separated_sasa(bool const compute_separated_sasa) | protocols::analysis::InterfaceAnalyzerMover | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_interface_jump(core::Size const interface_jump) | protocols::analysis::InterfaceAnalyzerMover | |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_pack_input(bool const pack_input) | protocols::analysis::InterfaceAnalyzerMover | |
| set_pack_separated(bool const pack_separated) | protocols::analysis::InterfaceAnalyzerMover | |
| set_pose_info(core::pose::Pose const &pose) | protocols::analysis::InterfaceAnalyzerMover | |
| set_skip_reporting(bool const skip_reporting) | protocols::analysis::InterfaceAnalyzerMover | inline |
| set_tracer(bool const tracer) | protocols::analysis::InterfaceAnalyzerMover | |
| set_use_centroid_dG(bool const use_centroid) | protocols::analysis::InterfaceAnalyzerMover | |
| set_use_jobname(bool const use_jobname) | protocols::analysis::InterfaceAnalyzerMover | |
| set_use_resfile(bool const use_resfile) | protocols::analysis::InterfaceAnalyzerMover | |
| setup_task(core::pose::Pose &pose) | protocols::analysis::InterfaceAnalyzerMover | private |
| sf_ | protocols::analysis::InterfaceAnalyzerMover | private |
| side1_nres_ | protocols::analysis::InterfaceAnalyzerMover | private |
| side1_score_ | protocols::analysis::InterfaceAnalyzerMover | private |
| side2_nres_ | protocols::analysis::InterfaceAnalyzerMover | private |
| side2_score_ | protocols::analysis::InterfaceAnalyzerMover | private |
| skip_reporting_ | protocols::analysis::InterfaceAnalyzerMover | private |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| task_ | protocols::analysis::InterfaceAnalyzerMover | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| total_hb_E_ | protocols::analysis::InterfaceAnalyzerMover | private |
| total_sasa_ | protocols::analysis::InterfaceAnalyzerMover | private |
| tracer_ | protocols::analysis::InterfaceAnalyzerMover | private |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| upstream_chains_ | protocols::analysis::InterfaceAnalyzerMover | private |
| use_centroid_ | protocols::analysis::InterfaceAnalyzerMover | private |
| use_jobname_ | protocols::analysis::InterfaceAnalyzerMover | private |
| use_resfile_ | protocols::analysis::InterfaceAnalyzerMover | private |
| use_tracer(bool const tracer) | protocols::analysis::InterfaceAnalyzerMover | inline |
| ~InterfaceAnalyzerMover() | protocols::analysis::InterfaceAnalyzerMover | virtual |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.4