protocols::rotamer_recovery::RRProtocolReferenceStructure Class Reference

#include <RRProtocolReferenceStructure.hh>

Inheritance diagram for protocols::rotamer_recovery::RRProtocolReferenceStructure:

Collaboration diagram for protocols::rotamer_recovery::RRProtocolReferenceStructure:

Public Member Functions
	RRProtocolReferenceStructure ()
	RRProtocolReferenceStructure (core::pose::PoseCOP reference_pose)
	~RRProtocolReferenceStructure ()
	RRProtocolReferenceStructure (RRProtocolReferenceStructure const &src)
std::string	get_name () const
std::string	get_parameters () const
void	reference_structure (core::pose::PoseCOP reference_pose)
void	run (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose, core::scoring::ScoreFunction const &, core::pack::task::PackerTask const &packer_task)
Public Member Functions inherited from protocols::rotamer_recovery::RRProtocol
virtual	~RRProtocol ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

Private Attributes
core::pose::PoseCOP	reference_pose_

Additional Inherited Members
Protected Member Functions inherited from protocols::rotamer_recovery::RRProtocol
bool	measure_rotamer_recovery (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2)

Detailed Description

Definition at line 37 of file RRProtocolReferenceStructure.hh.

Constructor & Destructor Documentation

protocols::rotamer_recovery::RRProtocolReferenceStructure::RRProtocolReferenceStructure

(

)

Definition at line 51 of file RRProtocolReferenceStructure.cc.

protocols::rotamer_recovery::RRProtocolReferenceStructure::RRProtocolReferenceStructure

(

core::pose::PoseCOP

reference_pose)

protocols::rotamer_recovery::RRProtocolReferenceStructure::~RRProtocolReferenceStructure

(

)

Definition at line 66 of file RRProtocolReferenceStructure.cc.

protocols::rotamer_recovery::RRProtocolReferenceStructure::RRProtocolReferenceStructure

(

RRProtocolReferenceStructure const &

src)

Definition at line 61 of file RRProtocolReferenceStructure.cc.

Member Function Documentation

string protocols::rotamer_recovery::RRProtocolReferenceStructure::get_name ( ) const

virtual

Implements protocols::rotamer_recovery::RRProtocol.

Definition at line 69 of file RRProtocolReferenceStructure.cc.

string protocols::rotamer_recovery::RRProtocolReferenceStructure::get_parameters ( ) const

virtual

Implements protocols::rotamer_recovery::RRProtocol.

Definition at line 74 of file RRProtocolReferenceStructure.cc.

void protocols::rotamer_recovery::RRProtocolReferenceStructure::reference_structure

(

core::pose::PoseCOP

reference_pose)

Definition at line 79 of file RRProtocolReferenceStructure.cc.

References reference_pose_.

void protocols::rotamer_recovery::RRProtocolReferenceStructure::run ( RRComparerOP  comparer, RRReporterOP  reporter, core::pose::Pose const &  pose, core::scoring::ScoreFunction const &  , core::pack::task::PackerTask const &  packer_task  )

virtual

measure rotamer recovery for each residue

Implements protocols::rotamer_recovery::RRProtocol.

Definition at line 86 of file RRProtocolReferenceStructure.cc.

References protocols::rotamer_recovery::RRProtocol::measure_rotamer_recovery(), core::pack::task::PackerTask::pack_residue(), reference_pose_, core::pose::Pose::residue(), and core::pose::Pose::total_residue().

Member Data Documentation

core::pose::PoseCOP protocols::rotamer_recovery::RRProtocolReferenceStructure::reference_pose_

private

Definition at line 72 of file RRProtocolReferenceStructure.hh.

Referenced by reference_structure(), and run().

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The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RRProtocolReferenceStructure.hh
• src/protocols/rotamer_recovery/RRProtocolReferenceStructure.cc