| accept_counter_ | protocols::simple_moves::GenericMonteCarloMover | private |
| adaptation_period(core::Size const a) | protocols::simple_moves::GenericMonteCarloMover | inline |
| adaptation_period() const | protocols::simple_moves::GenericMonteCarloMover | inline |
| adaptation_period_ | protocols::simple_moves::GenericMonteCarloMover | private |
| adaptive_ | protocols::simple_moves::GenericMonteCarloMover | private |
| adaptive_movers(bool const a) | protocols::simple_moves::GenericMonteCarloMover | inline |
| adaptive_movers() const | protocols::simple_moves::GenericMonteCarloMover | inline |
| adaptive_movers_ | protocols::simple_moves::GenericMonteCarloMover | private |
| add_filter(FilterOP filter, bool const adaptive, Real const temp, String const sample_type, bool rank_by=false) | protocols::simple_moves::GenericMonteCarloMover | |
| add_trigger(const GenericMonteCarloMoverTrigger &trigger) | protocols::simple_moves::GenericMonteCarloMover | |
| apply(Pose &pose) | protocols::simple_moves::GenericMonteCarloMover | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| boltz_rank_ | protocols::simple_moves::GenericMonteCarloMover | private |
| boltzmann(Pose &pose) | protocols::simple_moves::GenericMonteCarloMover | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::simple_moves::GenericMonteCarloMover | virtual |
| create() | protocols::moves::Mover | virtual |
| current_score() const | protocols::simple_moves::GenericMonteCarloMover | |
| current_score_ | protocols::simple_moves::GenericMonteCarloMover | private |
| DataMap typedef | protocols::simple_moves::GenericMonteCarloMover | |
| drift_ | protocols::simple_moves::GenericMonteCarloMover | private |
| energy_gap_counter_ | protocols::simple_moves::GenericMonteCarloMover | private |
| factory_ | protocols::simple_moves::GenericMonteCarloMover | private |
| FilterOP typedef | protocols::simple_moves::GenericMonteCarloMover | |
| filters_ | protocols::simple_moves::GenericMonteCarloMover | private |
| Filters_map typedef | protocols::simple_moves::GenericMonteCarloMover | |
| fire_all_triggers(Size cycle, Size num_cycles, const Pose &pose, ScoreFunctionOP scoring) | protocols::simple_moves::GenericMonteCarloMover | private |
| flip_sign_ | protocols::simple_moves::GenericMonteCarloMover | private |
| fresh_instance() const | protocols::simple_moves::GenericMonteCarloMover | virtual |
| GenericMonteCarloMover() | protocols::simple_moves::GenericMonteCarloMover | |
| GenericMonteCarloMover(Size const maxtrials, Size const task_scaling, MoverOP const &mover, Real const temperature=0.0, String const sample_type="low", bool const drift=true) | protocols::simple_moves::GenericMonteCarloMover | |
| GenericMonteCarloMover(Size const maxtrials, Size const task_scaling, MoverOP const &mover, TaskFactoryOP factory_in, Real const temperature=0.0, String const sample_type="low", bool const drift=true) | protocols::simple_moves::GenericMonteCarloMover | |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::simple_moves::GenericMonteCarloMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize() | protocols::simple_moves::GenericMonteCarloMover | |
| last_accepted_pose() const | protocols::simple_moves::GenericMonteCarloMover | |
| last_accepted_pose_ | protocols::simple_moves::GenericMonteCarloMover | private |
| last_accepted_score() const | protocols::simple_moves::GenericMonteCarloMover | |
| last_accepted_score_ | protocols::simple_moves::GenericMonteCarloMover | private |
| last_accepted_scores_ | protocols::simple_moves::GenericMonteCarloMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| load_trial_number_from_checkpoint(core::pose::Pose &) | protocols::simple_moves::GenericMonteCarloMover | |
| lowest_score() const | protocols::simple_moves::GenericMonteCarloMover | |
| lowest_score_ | protocols::simple_moves::GenericMonteCarloMover | private |
| lowest_score_pose() const | protocols::simple_moves::GenericMonteCarloMover | |
| lowest_score_pose_ | protocols::simple_moves::GenericMonteCarloMover | private |
| maxtrials_ | protocols::simple_moves::GenericMonteCarloMover | private |
| mc_accepted_ | protocols::simple_moves::GenericMonteCarloMover | private |
| mc_accpeted() const | protocols::simple_moves::GenericMonteCarloMover | |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| mover_ | protocols::simple_moves::GenericMonteCarloMover | private |
| mover_stopping_condition_ | protocols::simple_moves::GenericMonteCarloMover | private |
| mover_tag_ | protocols::simple_moves::GenericMonteCarloMover | private |
| MoverOP typedef | protocols::simple_moves::GenericMonteCarloMover | |
| Movers_map typedef | protocols::simple_moves::GenericMonteCarloMover | |
| name() | protocols::moves::Mover | inlinestatic |
| next_trigger_id_ | protocols::simple_moves::GenericMonteCarloMover | private |
| num_designable(Pose &pose, PackerTaskOP &task) | protocols::simple_moves::GenericMonteCarloMover | |
| num_rejections_ | protocols::simple_moves::GenericMonteCarloMover | private |
| num_triggers() const | protocols::simple_moves::GenericMonteCarloMover | |
| number_designable_ | protocols::simple_moves::GenericMonteCarloMover | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| PackerTask typedef | protocols::simple_moves::GenericMonteCarloMover | |
| PackerTaskCOP typedef | protocols::simple_moves::GenericMonteCarloMover | |
| PackerTaskOP typedef | protocols::simple_moves::GenericMonteCarloMover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &) | protocols::simple_moves::GenericMonteCarloMover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| parse_task_operations(TagPtr const, DataMap const &, Filters_map const &, Movers_map const &) | protocols::simple_moves::GenericMonteCarloMover | virtual |
| Pose typedef | protocols::simple_moves::GenericMonteCarloMover | |
| PoseCOP typedef | protocols::moves::Mover | |
| PoseOP typedef | protocols::simple_moves::GenericMonteCarloMover | |
| preapply_ | protocols::simple_moves::GenericMonteCarloMover | private |
| rank_by_filter_ | protocols::simple_moves::GenericMonteCarloMover | private |
| Real typedef | protocols::simple_moves::GenericMonteCarloMover | |
| recover_low(Pose &pose) | protocols::simple_moves::GenericMonteCarloMover | |
| recover_low_ | protocols::simple_moves::GenericMonteCarloMover | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| remove_trigger(Size trigger_id) | protocols::simple_moves::GenericMonteCarloMover | |
| reset(Pose &pose) | protocols::simple_moves::GenericMonteCarloMover | |
| reset_baselines(bool const r) | protocols::simple_moves::GenericMonteCarloMover | inline |
| reset_baselines() const | protocols::simple_moves::GenericMonteCarloMover | inline |
| reset_baselines_ | protocols::simple_moves::GenericMonteCarloMover | private |
| reset_status() | protocols::moves::Mover | |
| sample_type_ | protocols::simple_moves::GenericMonteCarloMover | private |
| sample_types_ | protocols::simple_moves::GenericMonteCarloMover | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| save_trial_number_to_checkpoint(core::Size const i) const | protocols::simple_moves::GenericMonteCarloMover | |
| saved_accept_file_name() const | protocols::simple_moves::GenericMonteCarloMover | |
| saved_accept_file_name(std::string const ) | protocols::simple_moves::GenericMonteCarloMover | |
| saved_accept_file_name_ | protocols::simple_moves::GenericMonteCarloMover | private |
| saved_trial_number_file() const | protocols::simple_moves::GenericMonteCarloMover | |
| saved_trial_number_file(std::string const ) | protocols::simple_moves::GenericMonteCarloMover | |
| saved_trial_number_file_ | protocols::simple_moves::GenericMonteCarloMover | private |
| score_function() const | protocols::simple_moves::GenericMonteCarloMover | inline |
| ScoreFunction typedef | protocols::simple_moves::GenericMonteCarloMover | |
| ScoreFunctionOP typedef | protocols::simple_moves::GenericMonteCarloMover | |
| scorefxn_ | protocols::simple_moves::GenericMonteCarloMover | private |
| scoring(Pose &pose) | protocols::simple_moves::GenericMonteCarloMover | private |
| set_boltz_rank(bool const boltz_rank) | protocols::simple_moves::GenericMonteCarloMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_drift(bool const drift) | protocols::simple_moves::GenericMonteCarloMover | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_maxtrials(Size const ntrial) | protocols::simple_moves::GenericMonteCarloMover | |
| set_mover(MoverOP const &mover) | protocols::simple_moves::GenericMonteCarloMover | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_preapply(bool const preapply=false) | protocols::simple_moves::GenericMonteCarloMover | |
| set_recover_low(bool const recover_low) | protocols::simple_moves::GenericMonteCarloMover | |
| set_sampletype(String const &type) | protocols::simple_moves::GenericMonteCarloMover | |
| set_scorefxn(ScoreFunctionOP const &sfxn) | protocols::simple_moves::GenericMonteCarloMover | |
| set_task_scaling(Size const scaling) | protocols::simple_moves::GenericMonteCarloMover | |
| set_temperature(Real const temp) | protocols::simple_moves::GenericMonteCarloMover | |
| show_counters(std::ostream &out) const | protocols::simple_moves::GenericMonteCarloMover | |
| show_scores(std::ostream &out) const | protocols::simple_moves::GenericMonteCarloMover | |
| Size typedef | protocols::simple_moves::GenericMonteCarloMover | |
| stopping_condition(protocols::filters::FilterOP filter) | protocols::simple_moves::GenericMonteCarloMover | |
| stopping_condition() const | protocols::simple_moves::GenericMonteCarloMover | |
| stopping_condition_ | protocols::simple_moves::GenericMonteCarloMover | private |
| String typedef | protocols::simple_moves::GenericMonteCarloMover | |
| Strings typedef | protocols::moves::Mover | |
| Super typedef | protocols::simple_moves::GenericMonteCarloMover | |
| TagPtr typedef | protocols::simple_moves::GenericMonteCarloMover | |
| task_ | protocols::simple_moves::GenericMonteCarloMover | private |
| task_factory(core::pack::task::TaskFactoryOP tf) | protocols::simple_moves::GenericMonteCarloMover | private |
| task_scaling_ | protocols::simple_moves::GenericMonteCarloMover | private |
| TaskFactoryOP typedef | protocols::simple_moves::GenericMonteCarloMover | |
| temperature_ | protocols::simple_moves::GenericMonteCarloMover | private |
| temperatures_ | protocols::simple_moves::GenericMonteCarloMover | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| trial_counter_ | protocols::simple_moves::GenericMonteCarloMover | private |
| triggers_ | protocols::simple_moves::GenericMonteCarloMover | private |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| user_defined_mover_name_ | protocols::simple_moves::GenericMonteCarloMover | private |
| ~GenericMonteCarloMover() | protocols::simple_moves::GenericMonteCarloMover | |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.4