#include <PairingsList.hh>

Collaboration diagram for core::scoring::dssp::Pairing:

Public Member Functions
	Pairing ()

	Pairing (core::Size pos1_in, core::Size pos2_in)

	Pairing (ObjexxFCL::FArray1A_int)

	Pairing (core::Size pos1_in, core::Size pos2_in, core::Size ori_in, core::Size pleat_in)

Size	Pos1 () const

void	Pos1 (Size pos1)

Size	Pos2 () const

void	Pos2 (Size pos2)

Size	Orientation () const

void	Orientation (Size orientation)

Size	Pleating () const

void	Pleating (Size pleating)

Pairing	reverse ()
	reverses the Pairing More...

Pairing	generate_reversed () const
	returns a new reversed pairing More...

bool	is_parallel () const

bool	is_anti () const

bool	is_inwards () const

bool	is_outwards () const

bool	operator== (Pairing const &p) const

Size	get_register ()

bool	operator< (Pairing const &p) const

Static Public Attributes
static core::Size const	ANTI = 1
	constant values that define orientation More...

static core::Size const	PARALLEL = 2

static core::Size const	OUTWARDS = 1

static core::Size const	INWARDS = 2

Private Attributes
Size	pos1_

Size	pos2_

Size	orientation_

Size	pleating_

Detailed Description

Definition at line 45 of file PairingsList.hh.

Constructor & Destructor Documentation

core::scoring::dssp::Pairing::Pairing ( )

inline

Definition at line 47 of file PairingsList.hh.

core::scoring::dssp::Pairing::Pairing	(	core::Size	pos1_in,
		core::Size	pos2_in
	)

inline

Definition at line 54 of file PairingsList.hh.

core::scoring::dssp::Pairing::Pairing ( ObjexxFCL::FArray1A_int data)

Definition at line 47 of file PairingsList.cc.

core::scoring::dssp::Pairing::Pairing	(	core::Size	pos1_in,
		core::Size	pos2_in,
		core::Size	ori_in,
		core::Size	pleat_in
	)

inline

Definition at line 64 of file PairingsList.hh.

Member Function Documentation

Pairing core::scoring::dssp::Pairing::generate_reversed ( ) const

returns a new reversed pairing

Definition at line 74 of file PairingsList.cc.

References reverse().

Size core::scoring::dssp::Pairing::get_register ( )

inline

Definition at line 145 of file PairingsList.hh.

References is_anti(), Pos1(), and Pos2().

bool core::scoring::dssp::Pairing::is_anti ( ) const

inline

Definition at line 122 of file PairingsList.hh.

References ANTI, and orientation_.

Referenced by core::scoring::dssp::StrandPairingSet::add_pairing(), get_register(), core::scoring::dssp::StrandPairing::has_pairing(), and core::scoring::dssp::StrandPairingSet::has_pairing().

bool core::scoring::dssp::Pairing::is_inwards ( ) const

inline

Definition at line 127 of file PairingsList.hh.

References INWARDS, and pleating_.

Referenced by core::scoring::dssp::operator<<().

bool core::scoring::dssp::Pairing::is_outwards ( ) const

inline

Definition at line 132 of file PairingsList.hh.

References OUTWARDS, and pleating_.

bool core::scoring::dssp::Pairing::is_parallel ( ) const

inline

Definition at line 116 of file PairingsList.hh.

References orientation_, and PARALLEL.

Referenced by core::scoring::dssp::operator<<().

bool core::scoring::dssp::Pairing::operator< ( Pairing const & p) const

inline

Definition at line 149 of file PairingsList.hh.

References Orientation(), Pleating(), Pos1(), and Pos2().

bool core::scoring::dssp::Pairing::operator== ( Pairing const & p) const

inline

Definition at line 137 of file PairingsList.hh.

References Orientation(), Pleating(), Pos1(), and Pos2().

Size core::scoring::dssp::Pairing::Orientation ( ) const

inline

Definition at line 87 of file PairingsList.hh.

References orientation_.

Referenced by core::scoring::dssp::StrandPairing::get_beta_pairs(), core::scoring::dssp::StrandPairing::has_common_pairing(), protocols::abinitio::Template::map_pairing(), operator<(), core::scoring::dssp::operator<<(), operator==(), and protocols::jumping::JumpSample::steal_orientation_and_pleating().

void core::scoring::dssp::Pairing::Orientation ( Size orientation)

inline

Definition at line 91 of file PairingsList.hh.

References orientation_.

Size core::scoring::dssp::Pairing::Pleating ( ) const

inline

Definition at line 95 of file PairingsList.hh.

References pleating_.

Referenced by core::scoring::dssp::StrandPairingSet::add_pairing(), protocols::jumping::SheetBuilder::check_two_pairings(), core::scoring::dssp::StrandPairing::get_beta_pairs(), core::scoring::dssp::StrandPairing::has_common_pairing(), protocols::abinitio::Template::map_pairing(), operator<(), core::scoring::dssp::operator<<(), operator==(), and protocols::jumping::JumpSample::steal_orientation_and_pleating().

void core::scoring::dssp::Pairing::Pleating ( Size pleating)

inline

Definition at line 99 of file PairingsList.hh.

References pleating_.

Size core::scoring::dssp::Pairing::Pos1 ( ) const

inline

Definition at line 71 of file PairingsList.hh.

References pos1_.

Referenced by core::scoring::dssp::StrandPairingSet::add_pairing(), protocols::hybridization::FoldTreeHybridize::add_strand_pairing(), protocols::hybridization::FoldTreeHybridize::add_strand_pairings(), protocols::jumping::SheetBuilder::check_two_pairings(), core::scoring::dssp::StrandPairing::get_beta_pairs(), get_register(), core::scoring::dssp::StrandPairing::has_common_pairing(), core::scoring::dssp::StrandPairing::has_pairing(), core::scoring::dssp::StrandPairingSet::has_pairing(), protocols::abinitio::Template::map_pairing(), operator<(), core::scoring::dssp::operator<<(), operator==(), and protocols::jumping::JumpSample::steal_orientation_and_pleating().

void core::scoring::dssp::Pairing::Pos1 ( Size pos1)

inline

Definition at line 75 of file PairingsList.hh.

References pos1_.

Size core::scoring::dssp::Pairing::Pos2 ( ) const

inline

Definition at line 79 of file PairingsList.hh.

References pos2_.

Referenced by core::scoring::dssp::StrandPairingSet::add_pairing(), protocols::hybridization::FoldTreeHybridize::add_strand_pairing(), protocols::hybridization::FoldTreeHybridize::add_strand_pairings(), protocols::jumping::SheetBuilder::check_two_pairings(), core::scoring::dssp::StrandPairing::get_beta_pairs(), get_register(), core::scoring::dssp::StrandPairing::has_common_pairing(), core::scoring::dssp::StrandPairing::has_pairing(), core::scoring::dssp::StrandPairingSet::has_pairing(), protocols::abinitio::Template::map_pairing(), operator<(), core::scoring::dssp::operator<<(), operator==(), and protocols::jumping::JumpSample::steal_orientation_and_pleating().

void core::scoring::dssp::Pairing::Pos2 ( Size pos2)

inline

Definition at line 83 of file PairingsList.hh.

References pos2_.

Pairing core::scoring::dssp::Pairing::reverse ( )

reverses the Pairing

Definition at line 55 of file PairingsList.cc.

Referenced by protocols::jumping::SheetBuilder::check_two_pairings(), generate_reversed(), protocols::abinitio::TemplateJumpSetup::is_helix_jump(), and core::scoring::dssp::read_pairing_list().

Member Data Documentation

core::Size const core::scoring::dssp::Pairing::ANTI = 1

static

constant values that define orientation

Definition at line 104 of file PairingsList.hh.

Referenced by is_anti().

core::Size const core::scoring::dssp::Pairing::INWARDS = 2

static

Definition at line 107 of file PairingsList.hh.

Referenced by is_inwards().

Size core::scoring::dssp::Pairing::orientation_

private

Definition at line 158 of file PairingsList.hh.

Referenced by is_anti(), is_parallel(), and Orientation().

core::Size const core::scoring::dssp::Pairing::OUTWARDS = 1

static

Definition at line 106 of file PairingsList.hh.

Referenced by is_outwards().

core::Size const core::scoring::dssp::Pairing::PARALLEL = 2

static

Definition at line 105 of file PairingsList.hh.

Referenced by is_parallel().

Size core::scoring::dssp::Pairing::pleating_

private

Definition at line 159 of file PairingsList.hh.

Referenced by is_inwards(), is_outwards(), and Pleating().

Size core::scoring::dssp::Pairing::pos1_

private

Definition at line 156 of file PairingsList.hh.

Referenced by Pos1().

Size core::scoring::dssp::Pairing::pos2_

private

Definition at line 157 of file PairingsList.hh.

Referenced by Pos2().

The documentation for this class was generated from the following files:

src/core/scoring/dssp/PairingsList.hh
src/core/scoring/dssp/PairingsList.cc

Public Member Functions

Static Public Attributes

Private Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation