protocols::simple_moves::GunnCost Class Reference

#include <GunnCost.hh>

Inheritance diagram for protocols::simple_moves::GunnCost:

Collaboration diagram for protocols::simple_moves::GunnCost:

Public Member Functions
	GunnCost ()
	GunnCost (core::Real cutoff)
	~GunnCost ()
void	score (core::fragment::Frame const &, core::pose::Pose const &pose, ScoreList &scores)
void	compute_gunn (core::fragment::Frame const &frame, core::Size frag_num, GunnTuple &data)
void	compute_gunn (core::pose::Pose const &pose, core::Size begin, core::Size end, GunnTuple &data)
core::Real	score_tuple (GunnTuple const &g1, GunnTuple const &g2)
Public Member Functions inherited from protocols::simple_moves::FragmentCost
std::string const &	type ()
core::Real	cutoff () const

Public Attributes
core::fragment::FragCache < GunnTuple >	frag_cache_

Private Attributes
utility::vector1 < core::pose::PoseOP >	various_length_poses_

Friends
class	GunnCostTest

Additional Inherited Members
Protected Member Functions inherited from protocols::simple_moves::FragmentCost
	FragmentCost (std::string type, core::Real cutoff)
virtual	~FragmentCost ()

Detailed Description

Definition at line 63 of file GunnCost.hh.

Constructor & Destructor Documentation

protocols::simple_moves::GunnCost::GunnCost

(

)

Definition at line 55 of file GunnCost.cc.

protocols::simple_moves::GunnCost::GunnCost

(

core::Real

cutoff)

Definition at line 56 of file GunnCost.cc.

protocols::simple_moves::GunnCost::~GunnCost

(

)

Definition at line 57 of file GunnCost.cc.

Member Function Documentation

void protocols::simple_moves::GunnCost::compute_gunn	(	core::fragment::Frame const &	frame,
		core::Size	frag_num,
		GunnTuple &	data
	)

Definition at line 83 of file GunnCost.cc.

References core::fragment::FragData::apply(), core::chemical::CENTROID, core::fragment::Frame::fragment(), core::fragment::Frame::fragment_as_pose(), core::fragment::Frame::length(), and various_length_poses_.

Referenced by score().

void protocols::simple_moves::GunnCost::compute_gunn	(	core::pose::Pose const &	pose,
		core::Size	begin,
		core::Size	end,
		GunnTuple &	data
	)

Definition at line 104 of file GunnCost.cc.

References core::sequence::end, protocols::simple_moves::GunnTuple::q1, protocols::simple_moves::GunnTuple::q2, protocols::simple_moves::GunnTuple::q3, protocols::simple_moves::GunnTuple::q4, protocols::simple_moves::GunnTuple::q5, protocols::simple_moves::GunnTuple::q6, core::pose::Pose::residue_type(), and core::pose::Pose::xyz().

void protocols::simple_moves::GunnCost::score ( core::fragment::Frame const &  frame, core::pose::Pose const &  pose, ScoreList &  scores  )

virtual

Implements protocols::simple_moves::FragmentCost.

Definition at line 59 of file GunnCost.cc.

References compute_gunn(), core::fragment::Frame::end(), frag_cache_, core::fragment::Frame::is_continuous(), core::fragment::Frame::length(), core::fragment::Frame::nr_frags(), score_tuple(), and core::fragment::Frame::start().

Referenced by protocols::nonlocal::SmoothPolicy::choose().

Real protocols::simple_moves::GunnCost::score_tuple	(	GunnTuple const &	g1,
		GunnTuple const &	g2
	)

Definition at line 179 of file GunnCost.cc.

References protocols::simple_moves::GunnTuple::q1, protocols::simple_moves::GunnTuple::q2, protocols::simple_moves::GunnTuple::q3, protocols::simple_moves::GunnTuple::q4, protocols::simple_moves::GunnTuple::q5, and protocols::simple_moves::GunnTuple::q6.

Referenced by score().

Friends And Related Function Documentation

friend class GunnCostTest

friend

Definition at line 64 of file GunnCost.hh.

Member Data Documentation

core::fragment::FragCache<GunnTuple> protocols::simple_moves::GunnCost::frag_cache_

Definition at line 76 of file GunnCost.hh.

Referenced by score().

utility::vector1< core::pose::PoseOP > protocols::simple_moves::GunnCost::various_length_poses_

private

Definition at line 79 of file GunnCost.hh.

Referenced by compute_gunn().

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The documentation for this class was generated from the following files:

• src/protocols/simple_moves/GunnCost.hh
• src/protocols/simple_moves/GunnCost.cc