SuperimposeMover.hh

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/// @file   SuperimposeMover.hh
/// @brief
/// @author Ingemar Andre

#ifndef INCLUDED_protocols_simple_moves_SuperimposeMover_hh
#define INCLUDED_protocols_simple_moves_SuperimposeMover_hh

// Unit headers
#include <protocols/simple_moves/SuperimposeMover.fwd.hh>
#include <protocols/moves/Mover.hh> // we need to store a pose
#include <core/pose/Pose.hh>

#include <utility/vector1.hh>


namespace protocols {
namespace simple_moves {

class SuperimposeMover : public moves::Mover {

public:
  /// @brief
  ///   empty constructor
  SuperimposeMover();

  SuperimposeMover( core::pose::Pose const & pose );

  ~SuperimposeMover();

  virtual void apply( core::pose::Pose & pose );
  virtual std::string get_name() const;

  void set_reference_pose( core::pose::Pose const & pose, Size start=1, Size end=-1);
  // Undefined, commenting out to fix PyRosetta build  void set_target_pose( Size start=1, Size end=-1);
  void set_target_range( Size start, Size end );

  void parse_my_tag( utility::tag::TagPtr const tag, protocols::moves::DataMap & data_map, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const & );

  protocols::moves::MoverOP clone() const;
  protocols::moves::MoverOP fresh_instance() const;

private:
  core::Real superimpose( core::pose::Pose & mod_pose, core::pose::Pose const & ref_pose, Size ref_start, Size ref_end, Size target_start, Size target_end);

private:

  core::pose::PoseOP ref_pose_;
  core::Size ref_start_, ref_end_;
  core::Size target_start_, target_end_;

};

} // moves
} // protocols

#endif //INCLUDED_protocols_simple_moves_SuperimposeMover_HH