protocols::toolbox::task_operations::RestrictInterGroupVectorOperation Class Reference

#include <RestrictInterGroupVectorOperation.hh>

Inheritance diagram for protocols::toolbox::task_operations::RestrictInterGroupVectorOperation:

Collaboration diagram for protocols::toolbox::task_operations::RestrictInterGroupVectorOperation:

Public Types
typedef core::pack::task::operation::TaskOperation	parent
typedef std::set< core::Size >	one_group
typedef std::pair< one_group, one_group >	group_pair
typedef utility::vector1 < group_pair >	group_vector
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr
typedef pose::Pose	Pose

Public Member Functions
	RestrictInterGroupVectorOperation ()
	default constructor More...
	RestrictInterGroupVectorOperation (group_vector const &group, core::Real CB_dist_cutoff, core::Real nearby_atom_cutoff, core::Real vector_angle_cutoff, core::Real vector_dist_cutoff)
	full constructor More...
	RestrictInterGroupVectorOperation (group_pair const &one_group, core::Real CB_dist_cutoff, core::Real nearby_atom_cutoff, core::Real vector_angle_cutoff, core::Real vector_dist_cutoff)
	~RestrictInterGroupVectorOperation ()
	destructor More...
virtual core::pack::task::operation::TaskOperationOP	clone () const
	make clone More...
virtual void	apply (Pose const &pose, core::pack::task::PackerTask &task) const
	parse_tag More...
void	insert_pair (group_pair pair)
	setters for member data More...
void	CB_dist_cutoff (core::Real CB_dist_cutoff)
void	nearby_atom_cutoff (core::Real nearby_atom_cutoff)
void	vector_angle_cutoff (core::Real vector_angle_cutoff)
void	vector_dist_cutoff (core::Real vector_dist_cutoff)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()
virtual void	parse_tag (TagPtr)
	Used to parse an xml-like tag to load parameters and properties. More...
virtual void	parse_def (utility::lua::LuaObject const &def)

Private Attributes
group_vector	pair_vector_
core::Real	CB_dist_cutoff_
core::Real	nearby_atom_cutoff_
core::Real	vector_angle_cutoff_
core::Real	vector_dist_cutoff_

Detailed Description

Definition at line 40 of file RestrictInterGroupVectorOperation.hh.

Member Typedef Documentation

typedef std::pair< one_group, one_group > protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::group_pair

Definition at line 44 of file RestrictInterGroupVectorOperation.hh.

typedef utility::vector1< group_pair > protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::group_vector

Definition at line 45 of file RestrictInterGroupVectorOperation.hh.

typedef std::set< core::Size > protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::one_group

Definition at line 43 of file RestrictInterGroupVectorOperation.hh.

typedef core::pack::task::operation::TaskOperation protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::parent

Definition at line 42 of file RestrictInterGroupVectorOperation.hh.

Constructor & Destructor Documentation

protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::RestrictInterGroupVectorOperation

(

)

default constructor

Definition at line 48 of file RestrictInterGroupVectorOperation.cc.

Referenced by clone().

protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::RestrictInterGroupVectorOperation	(	group_vector const &	group,
		core::Real	CB_dist_cutoff,
		core::Real	nearby_atom_cutoff,
		core::Real	vector_angle_cutoff,
		core::Real	vector_dist_cutoff
	)

full constructor

Definition at line 58 of file RestrictInterGroupVectorOperation.cc.

protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::RestrictInterGroupVectorOperation	(	group_pair const &	one_group,
		core::Real	CB_dist_cutoff,
		core::Real	nearby_atom_cutoff,
		core::Real	vector_angle_cutoff,
		core::Real	vector_dist_cutoff
	)

Definition at line 74 of file RestrictInterGroupVectorOperation.cc.

References pair_vector_.

protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::~RestrictInterGroupVectorOperation

(

)

destructor

Definition at line 93 of file RestrictInterGroupVectorOperation.cc.

Member Function Documentation

void protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::apply ( Pose const &  pose, core::pack::task::PackerTask &  task  ) const

virtual

parse_tag

apply

apply function, uses inherited functionality

Implements core::pack::task::operation::TaskOperation.

Definition at line 127 of file RestrictInterGroupVectorOperation.cc.

References core::pack::task::operation::util::calc_interacting_vector(), CB_dist_cutoff_, nearby_atom_cutoff_, pair_vector_, core::pack::task::PackerTask::restrict_to_residues(), core::pose::Pose::total_residue(), vector_angle_cutoff_, and vector_dist_cutoff_.

void protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::CB_dist_cutoff

(

core::Real

CB_dist_cutoff)

Definition at line 112 of file RestrictInterGroupVectorOperation.cc.

References CB_dist_cutoff_.

core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::clone ( ) const

virtual

make clone

be warned if you use clone that you'll not get a new interface calculator

Implements core::pack::task::operation::TaskOperation.

Definition at line 103 of file RestrictInterGroupVectorOperation.cc.

References RestrictInterGroupVectorOperation().

void protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::insert_pair

(

group_pair

pair)

setters for member data

setters

Definition at line 109 of file RestrictInterGroupVectorOperation.cc.

References pair_vector_.

void protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::nearby_atom_cutoff

(

core::Real

nearby_atom_cutoff)

Definition at line 115 of file RestrictInterGroupVectorOperation.cc.

References nearby_atom_cutoff_.

void protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::vector_angle_cutoff

(

core::Real

vector_angle_cutoff)

Definition at line 118 of file RestrictInterGroupVectorOperation.cc.

References vector_angle_cutoff_.

void protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::vector_dist_cutoff

(

core::Real

vector_dist_cutoff)

Definition at line 121 of file RestrictInterGroupVectorOperation.cc.

References vector_dist_cutoff_.

Member Data Documentation

core::Real protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::CB_dist_cutoff_

private

Definition at line 94 of file RestrictInterGroupVectorOperation.hh.

Referenced by apply(), and CB_dist_cutoff().

core::Real protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::nearby_atom_cutoff_

private

Definition at line 95 of file RestrictInterGroupVectorOperation.hh.

Referenced by apply(), and nearby_atom_cutoff().

group_vector protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::pair_vector_

private

Definition at line 93 of file RestrictInterGroupVectorOperation.hh.

Referenced by apply(), insert_pair(), and RestrictInterGroupVectorOperation().

core::Real protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::vector_angle_cutoff_

private

Definition at line 96 of file RestrictInterGroupVectorOperation.hh.

Referenced by apply(), and vector_angle_cutoff().

core::Real protocols::toolbox::task_operations::RestrictInterGroupVectorOperation::vector_dist_cutoff_

private

Definition at line 97 of file RestrictInterGroupVectorOperation.hh.

Referenced by apply(), and vector_dist_cutoff().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/task_operations/RestrictInterGroupVectorOperation.hh
• src/protocols/toolbox/task_operations/RestrictInterGroupVectorOperation.cc