protocols::genetic_algorithm::GeneticAlgorithm Member List

This is the complete list of members for protocols::genetic_algorithm::GeneticAlgorithm, including all inherited members.

add_entity(EntityElements const &traits)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
add_entity(EntityOP entity)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
add_parent_entity(EntityElements const &traits)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
add_parent_entity(EntityOP entity)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
add_parents_from_current_generation()	protocols::genetic_algorithm::GeneticAlgorithm	virtual
best_entities(core::Size num)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
best_fitness_from_current_generation() const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
checkpoint_gzip_	protocols::genetic_algorithm::GeneticAlgorithm	private
checkpoint_prefix_	protocols::genetic_algorithm::GeneticAlgorithm	private
checkpoint_rename_	protocols::genetic_algorithm::GeneticAlgorithm	private
checkpoint_write_interval_	protocols::genetic_algorithm::GeneticAlgorithm	private
clear_parents()	protocols::genetic_algorithm::GeneticAlgorithm	virtual
complete()	protocols::genetic_algorithm::GeneticAlgorithm	virtual
current_generation() const	protocols::genetic_algorithm::GeneticAlgorithm	inlinevirtual
current_generation_	protocols::genetic_algorithm::GeneticAlgorithm	private
current_generation_complete()	protocols::genetic_algorithm::GeneticAlgorithm	virtual
entities_checkpoint_filename(std::string suffix="") const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
entity_cache()	protocols::genetic_algorithm::GeneticAlgorithm	virtual
entity_cache() const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
entity_cache_	protocols::genetic_algorithm::GeneticAlgorithm	private
entity_randomizer_	protocols::genetic_algorithm::GeneticAlgorithm	private
entity_template() const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
entity_template_	protocols::genetic_algorithm::GeneticAlgorithm	private
EntityCAP typedef	protocols::genetic_algorithm::GeneticAlgorithm
EntityCAPs typedef	protocols::genetic_algorithm::GeneticAlgorithm
EntityCOP typedef	protocols::genetic_algorithm::GeneticAlgorithm
EntityCOPs typedef	protocols::genetic_algorithm::GeneticAlgorithm
EntityOP typedef	protocols::genetic_algorithm::GeneticAlgorithm
EntityRandomizerOP typedef	protocols::genetic_algorithm::GeneticAlgorithm
evaluate_fitnesses()	protocols::genetic_algorithm::GeneticAlgorithm	virtual
evolve_next_generation()	protocols::genetic_algorithm::GeneticAlgorithm	virtual
fill_by_crossover(core::Size size=0)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
fill_by_mutation(core::Size size=0)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
fill_with_random_entities(core::Size size=0)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
fitness_function_	protocols::genetic_algorithm::GeneticAlgorithm	private
FitnessFunctionOP typedef	protocols::genetic_algorithm::GeneticAlgorithm
fraction_by_recombination_	protocols::genetic_algorithm::GeneticAlgorithm	private
generations() const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
generations_	protocols::genetic_algorithm::GeneticAlgorithm	private
generations_checkpoint_filename(std::string suffix="") const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
GeneticAlgorithm()	protocols::genetic_algorithm::GeneticAlgorithm
max_generations() const	protocols::genetic_algorithm::GeneticAlgorithm	inlinevirtual
max_generations_	protocols::genetic_algorithm::GeneticAlgorithm	private
max_population_size_	protocols::genetic_algorithm::GeneticAlgorithm	private
new_entity()	protocols::genetic_algorithm::GeneticAlgorithm	virtual
number_to_propagate_	protocols::genetic_algorithm::GeneticAlgorithm	private
parent_entities_	protocols::genetic_algorithm::GeneticAlgorithm	private
pop_const_const_iter typedef	protocols::genetic_algorithm::GeneticAlgorithm
pop_const_iter typedef	protocols::genetic_algorithm::GeneticAlgorithm
pop_iter typedef	protocols::genetic_algorithm::GeneticAlgorithm
population(core::Size gen_num) const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
print_cache(std::ostream &) const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
print_generation_statistics(std::ostream &os, core::Size gen_num) const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
print_population(std::ostream &) const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
propagate_best_from_previous_generation(core::Size size=1, bool unique=true)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
read_checkpoint()	protocols::genetic_algorithm::GeneticAlgorithm	virtual
read_entities_checkpoint(bool overwrite=false)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
read_generations_checkpoint()	protocols::genetic_algorithm::GeneticAlgorithm	virtual
rename_checkpoint_files() const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
set_checkpoint_gzip(bool b)	protocols::genetic_algorithm::GeneticAlgorithm	inlinevirtual
set_checkpoint_prefix(std::string const &p)	protocols::genetic_algorithm::GeneticAlgorithm	inlinevirtual
set_checkpoint_rename(bool b)	protocols::genetic_algorithm::GeneticAlgorithm	inlinevirtual
set_checkpoint_write_interval(core::Size i)	protocols::genetic_algorithm::GeneticAlgorithm	inlinevirtual
set_entity_template(EntityCOP entity)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
set_frac_by_recomb(core::Real f)	protocols::genetic_algorithm::GeneticAlgorithm	inlinevirtual
set_func(FitnessFunctionOP f)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
set_max_generations(core::Size s)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
set_max_pop_size(core::Size s)	protocols::genetic_algorithm::GeneticAlgorithm	inlinevirtual
set_num_to_propagate(core::Size s)	protocols::genetic_algorithm::GeneticAlgorithm	inlinevirtual
set_rand(EntityRandomizerOP r)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
tournament_select(utility::vector1< EntityCOP > const &pvec) const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
TraitEntityHashMap typedef	protocols::genetic_algorithm::GeneticAlgorithm
write_entities_checkpoint() const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
write_generations_checkpoint() const	protocols::genetic_algorithm::GeneticAlgorithm	virtual
~GeneticAlgorithm()	protocols::genetic_algorithm::GeneticAlgorithm	virtual