#include <KCluster.hh>

Inheritance diagram for protocols::toolbox::KClusterElement:

Collaboration diagram for protocols::toolbox::KClusterElement:

Public Types
typedef utility::vector1< Size >	ClusterNdxList

typedef utility::vector1< Size >	ClusterTypList

typedef utility::vector1< Real >	ClusterDisList

Public Member Functions
virtual	~KClusterElement ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

	KClusterElement ()

	KClusterElement (Size nd)

void	assign_type_data (Size, Size, Real)
	assign a data into a cluster More...

void	add_new_data (Size ndx_data)
	add a new struture ndx to the data_ndx_ More...

void	add_new_cluster (Size ndx_data)
	add a new cluster center's data_ndx More...

void	set_cluster (Size ndx_cluster, Size ndx_data)
	set a cluster center's data_ndx More...

Size	get_type (Size ndx_data) const
	return data's type(local cluster index) More...

Real	get_distance (Size ndx_data) const
	return distance between data and center More...

Size	get_center_ndx (Size ndx_cluster) const
	return cluster center's data_ndx More...

const utility::vector1< Size > &	get_ndx_list () const
	return the data ndx list of this cluster More...

const utility::vector1< Size > &	get_ndx_list (Size c) const
	return the ndx list of sub-cluster More...

KClusterElementOP	get_subcluster (Size nc) const
	return the subcluster More...

Size	ncluster ()

Size	get_cur_ncluster () const
	return current cluster number More...

Size	get_ndata () const
	return current data number More...

Size	get_data_ndx (Size ndx_data) const
	return current data number More...

Real	get_max_distance () const

Size	get_max_dist_ndx () const

void	clear_data ()
	clean the data list More...

void	clear ()
	clean the subcluster's list, open edit mode More...

void	check ()
	check the list, close edit mode More...

Private Attributes
ClusterNdxList	data_ndx_

ClusterTypList	type_list_

ClusterDisList	dist_list_

ClusterNdxList	center_ndx_

utility::vector1 < KClusterElementOP >	subclusters_

Size	n_data_

Real	max_distance_

Size	max_dist_ndx_

bool	edit_mode

Detailed Description

Definition at line 43 of file KCluster.hh.

Member Typedef Documentation

typedef utility::vector1< Real > protocols::toolbox::KClusterElement::ClusterDisList

Definition at line 50 of file KCluster.hh.

typedef utility::vector1< Size > protocols::toolbox::KClusterElement::ClusterNdxList

Definition at line 48 of file KCluster.hh.

typedef utility::vector1< Size > protocols::toolbox::KClusterElement::ClusterTypList

Definition at line 49 of file KCluster.hh.

Constructor & Destructor Documentation

protocols::toolbox::KClusterElement::~KClusterElement ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

Definition at line 62 of file KCluster.cc.

protocols::toolbox::KClusterElement::KClusterElement ( )

inline

Definition at line 52 of file KCluster.hh.

protocols::toolbox::KClusterElement::KClusterElement ( Size nd)

inline

Definition at line 57 of file KCluster.hh.

Member Function Documentation

void protocols::toolbox::KClusterElement::add_new_cluster ( Size ndx_data)

inline

add a new cluster center's data_ndx

Definition at line 81 of file KCluster.hh.

void protocols::toolbox::KClusterElement::add_new_data ( Size ndx_data)

inline

add a new struture ndx to the data_ndx_

Definition at line 72 of file KCluster.hh.

void protocols::toolbox::KClusterElement::assign_type_data	(	Size	ndx_data,
		Size	ndx_cluster,
		Real	d
	)

assign a data into a cluster

Definition at line 157 of file KCluster.cc.

void protocols::toolbox::KClusterElement::check ( )

inline

check the list, close edit mode

Definition at line 182 of file KCluster.hh.

void protocols::toolbox::KClusterElement::clear ( )

inline

clean the subcluster's list, open edit mode

Definition at line 169 of file KCluster.hh.

void protocols::toolbox::KClusterElement::clear_data ( )

inline

clean the data list

Definition at line 162 of file KCluster.hh.

Size protocols::toolbox::KClusterElement::get_center_ndx ( Size ndx_cluster) const

inline

return cluster center's data_ndx

Definition at line 106 of file KCluster.hh.

Size protocols::toolbox::KClusterElement::get_cur_ncluster ( ) const

inline

return current cluster number

Definition at line 134 of file KCluster.hh.

Size protocols::toolbox::KClusterElement::get_data_ndx ( Size ndx_data) const

inline

return current data number

Definition at line 146 of file KCluster.hh.

Real protocols::toolbox::KClusterElement::get_distance ( Size ndx_data) const

inline

return distance between data and center

Definition at line 100 of file KCluster.hh.

Size protocols::toolbox::KClusterElement::get_max_dist_ndx ( ) const

inline

Definition at line 156 of file KCluster.hh.

Real protocols::toolbox::KClusterElement::get_max_distance ( ) const

inline

Definition at line 151 of file KCluster.hh.

Size protocols::toolbox::KClusterElement::get_ndata ( ) const

inline

return current data number

Definition at line 140 of file KCluster.hh.

const utility::vector1<Size>& protocols::toolbox::KClusterElement::get_ndx_list ( ) const

inline

return the data ndx list of this cluster

Definition at line 112 of file KCluster.hh.

const utility::vector1<Size>& protocols::toolbox::KClusterElement::get_ndx_list ( Size c) const

inline

return the ndx list of sub-cluster

Definition at line 118 of file KCluster.hh.

References core::pack::dunbrack::c.

KClusterElementOP protocols::toolbox::KClusterElement::get_subcluster ( Size nc) const

inline

return the subcluster

Definition at line 124 of file KCluster.hh.

Size protocols::toolbox::KClusterElement::get_type ( Size ndx_data) const

inline

return data's type(local cluster index)

Definition at line 94 of file KCluster.hh.

Size protocols::toolbox::KClusterElement::ncluster ( )

inline

Definition at line 129 of file KCluster.hh.

void protocols::toolbox::KClusterElement::set_cluster	(	Size	ndx_cluster,
		Size	ndx_data
	)

inline

set a cluster center's data_ndx

Definition at line 88 of file KCluster.hh.

Member Data Documentation

ClusterNdxList protocols::toolbox::KClusterElement::center_ndx_

private

Definition at line 193 of file KCluster.hh.

ClusterNdxList protocols::toolbox::KClusterElement::data_ndx_

private

Definition at line 189 of file KCluster.hh.

ClusterDisList protocols::toolbox::KClusterElement::dist_list_

private

Definition at line 191 of file KCluster.hh.

bool protocols::toolbox::KClusterElement::edit_mode

private

Definition at line 200 of file KCluster.hh.

Size protocols::toolbox::KClusterElement::max_dist_ndx_

private

Definition at line 198 of file KCluster.hh.

Real protocols::toolbox::KClusterElement::max_distance_

private

Definition at line 197 of file KCluster.hh.

Size protocols::toolbox::KClusterElement::n_data_

private

Definition at line 196 of file KCluster.hh.

utility::vector1< KClusterElementOP > protocols::toolbox::KClusterElement::subclusters_

private

Definition at line 194 of file KCluster.hh.

ClusterTypList protocols::toolbox::KClusterElement::type_list_

private

Definition at line 190 of file KCluster.hh.

The documentation for this class was generated from the following files:

src/protocols/toolbox/KCluster.hh
src/protocols/toolbox/KCluster.cc

Public Types

Public Member Functions

Private Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation