#include <EnzdesCstCache.hh>

Inheritance diagram for protocols::toolbox::match_enzdes_util::EnzdesCstParamCache:

Collaboration diagram for protocols::toolbox::match_enzdes_util::EnzdesCstParamCache:

Public Member Functions
	EnzdesCstParamCache ()
	Default constructor right now two instances of cached template res get created probably not ideal in general case, but is always the case in the current implementation of enzdes, and this is the only thing using this at the moment. More...

	EnzdesCstParamCache (EnzdesCstParamCache const &other)

virtual	~EnzdesCstParamCache ()

EnzCstTemplateResCacheOP	template_res_cache (core::Size index)

EnzCstTemplateResCacheCOP	template_res_cache (core::Size index) const

core::Size	template_res_cache_size () const

utility::vector1 < core::scoring::constraints::ConstraintCOP > const &	active_pose_constraints () const

utility::vector1 < core::scoring::constraints::ConstraintCOP > &	active_pose_constraints ()

void	set_active_pose_constraints (utility::vector1< core::scoring::constraints::ConstraintCOP > const &constraints)

void	clear_active_pose_constraints ()

utility::vector1 < CovalentConnectionReplaceInfoCOP > const &	covalent_connections () const

bool	missing_in_pose () const

void	remove_seqpos_from_template_res (core::Size seqpos)

void	set_position_for_missing_res (core::Size seqpos)

bool	contains_position (core::Size seqpos) const

void	remap_resid (core::id::SequenceMapping const &smap)
	remapping sequence positions More...

Private Attributes
utility::vector1 < EnzCstTemplateResCacheOP >	template_res_cache_

utility::vector1 < core::scoring::constraints::ConstraintCOP >	active_pose_constraints_

utility::vector1 < CovalentConnectionReplaceInfoCOP >	covalent_connections_

Friends
class	EnzConstraintParameters

Detailed Description

Definition at line 105 of file EnzdesCstCache.hh.

Constructor & Destructor Documentation

protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::EnzdesCstParamCache ( )

Default constructor right now two instances of cached template res get created probably not ideal in general case, but is always the case in the current implementation of enzdes, and this is the only thing using this at the moment.

Definition at line 157 of file EnzdesCstCache.cc.

protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::EnzdesCstParamCache ( EnzdesCstParamCache const & other)

Definition at line 163 of file EnzdesCstCache.cc.

References template_res_cache_.

protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::~EnzdesCstParamCache ( )

virtual

Definition at line 175 of file EnzdesCstCache.cc.

Member Function Documentation

utility::vector1< core::scoring::constraints::ConstraintCOP > const& protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::active_pose_constraints ( ) const

inline

Definition at line 134 of file EnzdesCstCache.hh.

References active_pose_constraints_.

utility::vector1< core::scoring::constraints::ConstraintCOP >& protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::active_pose_constraints ( )

inline

Definition at line 138 of file EnzdesCstCache.hh.

References active_pose_constraints_.

void protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::clear_active_pose_constraints ( )

Definition at line 186 of file EnzdesCstCache.cc.

References active_pose_constraints_.

bool protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::contains_position ( core::Size seqpos) const

Definition at line 234 of file EnzdesCstCache.cc.

References template_res_cache_.

utility::vector1< CovalentConnectionReplaceInfoCOP > const& protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::covalent_connections ( ) const

inline

Definition at line 153 of file EnzdesCstCache.hh.

References covalent_connections_.

bool protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::missing_in_pose ( ) const

Definition at line 192 of file EnzdesCstCache.cc.

References template_res_cache_.

Referenced by protocols::enzdes::enzutil::create_remark_headers_from_cstcache().

void protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::remap_resid ( core::id::SequenceMapping const & smap)

remapping sequence positions

have to remap all the data that's cached

the information about the template res
the actual constraints
the information about covalent connections

Definition at line 248 of file EnzdesCstCache.cc.

References active_pose_constraints_, covalent_connections_, and template_res_cache_.

void protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::remove_seqpos_from_template_res ( core::Size seqpos)

Definition at line 201 of file EnzdesCstCache.cc.

References template_res_cache_.

void protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::set_active_pose_constraints ( utility::vector1< core::scoring::constraints::ConstraintCOP > const & constraints)

Definition at line 179 of file EnzdesCstCache.cc.

References active_pose_constraints_.

void protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::set_position_for_missing_res ( core::Size seqpos)

Definition at line 218 of file EnzdesCstCache.cc.

References template_res_cache_.

EnzCstTemplateResCacheOP protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::template_res_cache ( core::Size index)

inline

Definition at line 122 of file EnzdesCstCache.hh.

References template_res_cache_.

Referenced by protocols::enzdes::enzutil::create_remark_headers_from_cstcache().

EnzCstTemplateResCacheCOP protocols::toolbox::match_enzdes_util::EnzdesCstParamCache::template_res_cache ( core::Size index) const

inline