protocols::rna::FragmentLibrary Class Reference

#include <FullAtomRNA_Fragments.hh>

Inheritance diagram for protocols::rna::FragmentLibrary:

Collaboration diagram for protocols::rna::FragmentLibrary:

Public Member Functions
virtual	~FragmentLibrary ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
core::Real	get_fragment_torsion (core::Size const num_torsion, Size const which_frag, core::Size const offset)
TorsionSet const	get_fragment_torsion_set (core::Size const which_frag)
void	add_torsion (TorsionSet const torsion_set)
void	add_torsion (FullAtomRNA_Fragments const &vall, core::Size const position, core::Size const size)
core::Size	get_align_depth ()
core::Real	get_fragment_torsion (core::Size const num_torsion, Size const which_frag, core::Size const offset)
TorsionSet const	get_fragment_torsion_set (core::Size const which_frag)
void	add_torsion (TorsionSet const torsion_set)
void	add_torsion (RNA_Fragments const &vall, core::Size const position, core::Size const size)
core::Size	get_align_depth ()

Private Attributes
std::vector< TorsionSet >	align_torsions_

Detailed Description

Definition at line 86 of file FullAtomRNA_Fragments.hh.

Constructor & Destructor Documentation

protocols::rna::FragmentLibrary::~FragmentLibrary ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

Definition at line 65 of file FullAtomRNA_Fragments.cc.

Member Function Documentation

void protocols::rna::FragmentLibrary::add_torsion

(

TorsionSet const

torsion_set)

void protocols::rna::FragmentLibrary::add_torsion	(	RNA_Fragments const &	vall,
		core::Size const	position,
		core::Size const	size
	)

Definition at line 117 of file RNA_FragmentsClasses.cc.

References protocols::rna::RNA_Fragments::name(), protocols::rna::TorsionSet::non_main_chain_sugar_coords, protocols::rna::RNA_Fragments::non_main_chain_sugar_coords(), protocols::rna::TorsionSet::non_main_chain_sugar_coords_defined, protocols::rna::RNA_Fragments::non_main_chain_sugar_coords_defined(), core::scoring::rna::NUM_RNA_TORSIONS(), protocols::rna::TorsionSet::secstruct, protocols::rna::RNA_Fragments::secstruct(), core::io::serialization::size(), protocols::rna::TorsionSet::torsion_source_name, protocols::rna::TorsionSet::torsions, and protocols::rna::RNA_Fragments::torsions().

void protocols::rna::FragmentLibrary::add_torsion

(

TorsionSet const

torsion_set)

Definition at line 126 of file FullAtomRNA_Fragments.cc.

Referenced by protocols::rna::RNA_Fragments::pick_fragment_library().

void protocols::rna::FragmentLibrary::add_torsion	(	FullAtomRNA_Fragments const &	vall,
		core::Size const	position,
		core::Size const	size
	)

Definition at line 131 of file FullAtomRNA_Fragments.cc.

References protocols::rna::FullAtomRNA_Fragments::name(), protocols::rna::TorsionSet::non_main_chain_sugar_coords, protocols::rna::FullAtomRNA_Fragments::non_main_chain_sugar_coords(), protocols::rna::TorsionSet::non_main_chain_sugar_coords_defined, protocols::rna::FullAtomRNA_Fragments::non_main_chain_sugar_coords_defined(), core::scoring::rna::NUM_RNA_TORSIONS(), protocols::rna::TorsionSet::secstruct, protocols::rna::FullAtomRNA_Fragments::secstruct(), core::io::serialization::size(), protocols::rna::TorsionSet::torsion_source_name, protocols::rna::TorsionSet::torsions, and protocols::rna::FullAtomRNA_Fragments::torsions().

core::Size protocols::rna::FragmentLibrary::get_align_depth

(

)

Size protocols::rna::FragmentLibrary::get_align_depth

(

)

Definition at line 168 of file FullAtomRNA_Fragments.cc.

Referenced by protocols::rna::RNA_Fragments::pick_fragment_library().

core::Real protocols::rna::FragmentLibrary::get_fragment_torsion	(	core::Size const	num_torsion,
		Size const	which_frag,
		core::Size const	offset
	)

Real protocols::rna::FragmentLibrary::get_fragment_torsion	(	core::Size const	num_torsion,
		Size const	which_frag,
		core::Size const	offset
	)

Definition at line 116 of file FullAtomRNA_Fragments.cc.

TorsionSet const protocols::rna::FragmentLibrary::get_fragment_torsion_set

(

core::Size const

which_frag)

TorsionSet const protocols::rna::FragmentLibrary::get_fragment_torsion_set

(

core::Size const

which_frag)

Definition at line 121 of file FullAtomRNA_Fragments.cc.

Member Data Documentation

std::vector< TorsionSet > protocols::rna::FragmentLibrary::align_torsions_

private

Definition at line 115 of file FullAtomRNA_Fragments.hh.

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The documentation for this class was generated from the following files:

• src/protocols/rna/FullAtomRNA_Fragments.hh
• src/protocols/rna/RNA_FragmentsClasses.hh
• src/protocols/rna/FullAtomRNA_Fragments.cc
• src/protocols/rna/RNA_FragmentsClasses.cc