Rosetta 3.5: protocols::toolbox::task_operations::SelectBySASAOperation Class Reference

#include <SelectBySASAOperation.hh>

Inheritance diagram for protocols::toolbox::task_operations::SelectBySASAOperation:

Inheritance graph

Collaboration diagram for protocols::toolbox::task_operations::SelectBySASAOperation:

Collaboration graph

Public Member Functions
	SelectBySASAOperation (std::string mode="sc", std::string state="monomer", core::Real probe_radius=2.2, core::Real core_asa=0, core::Real surface_asa=30, std::string jump_nums="1", std::string sym_dof_names="", bool core=0, bool boundary=0, bool surface=0, bool verbose=0)

virtual	~SelectBySASAOperation ()

virtual core::pack::task::operation::TaskOperationOP	clone () const
	Create another task operation of the type matching the most-derived version of the class. More...

virtual void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...

void	parse_tag (TagPtr tag)
	Used to parse an xml-like tag to load parameters and properties. More...

void	parse_def (utility::lua::LuaObject const &def)

Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()

Private Attributes
std::string	mode_

std::string	state_

core::Real	probe_radius_

core::Real	core_asa_

core::Real	surface_asa_

std::string	jump_nums_

std::string	sym_dof_names_

bool	core_

bool	boundary_

bool	surface_

bool	verbose_

Additional Inherited Members
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr

typedef pose::Pose	Pose

Detailed Description

Definition at line 36 of file SelectBySASAOperation.hh.

Constructor & Destructor Documentation

protocols::toolbox::task_operations::SelectBySASAOperation::SelectBySASAOperation	(	std::string	mode = `"sc"`,
		std::string	state = `"monomer"`,
		core::Real	probe_radius = `2.2`,
		core::Real	core_asa = `0`,
		core::Real	surface_asa = `30`,
		std::string	jump_nums = `"1"`,
		std::string	sym_dof_names = `""`,
		bool	core = `0`,
		bool	boundary = `0`,
		bool	surface = `0`,
		bool	verbose = `0`
	)

Definition at line 51 of file SelectBySASAOperation.cc.

Referenced by clone().

protocols::toolbox::task_operations::SelectBySASAOperation::~SelectBySASAOperation ( )

virtual

Definition at line 65 of file SelectBySASAOperation.cc.

Member Function Documentation

void protocols::toolbox::task_operations::SelectBySASAOperation::apply	(	core::pose::Pose const &	,
		core::pack::task::PackerTask &
	)		const

virtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

Definition at line 73 of file SelectBySASAOperation.cc.

References boundary_, core::scoring::calc_per_atom_sasa(), core::pose::Pose::conformation(), core_, core_asa_, core::pose::symmetry::extract_asymmetric_unit(), core::pose::symmetry::get_sym_aware_jump_num(), core::pose::initialize_atomid_map(), core::conformation::Residue::is_protein(), core::pose::symmetry::is_symmetric(), jump_nums_, mode_, core::pose::Pose::n_residue(), core::conformation::Residue::name3(), core::conformation::Residue::nheavyatoms(), core::pack::task::PackerTask::nonconst_residue_task(), core::conformation::Conformation::num_chains(), core::pack::task::ResidueLevelTask::prevent_repacking(), probe_radius_, core::pose::Pose::residue(), core::id::AtomID_Map< T >::set(), core::pose::Pose::split_by_chain(), state_, surface_, surface_asa_, core::pose::symmetry::sym_dof_jump_num(), sym_dof_names_, core::pose::symmetry::symmetry_info(), protocols::TR(), protocols::swa::translate(), and verbose_.

core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::SelectBySASAOperation::clone ( ) const

virtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

Definition at line 67 of file SelectBySASAOperation.cc.

References SelectBySASAOperation().

void protocols::toolbox::task_operations::SelectBySASAOperation::parse_def ( utility::lua::LuaObject const & def)

virtual

Reimplemented from core::pack::task::operation::TaskOperation.

Definition at line 257 of file SelectBySASAOperation.cc.

References boundary_, core_, core_asa_, jump_nums_, mode_, probe_radius_, state_, surface_, surface_asa_, sym_dof_names_, and verbose_.

void protocols::toolbox::task_operations::SelectBySASAOperation::parse_tag ( TagPtr tag)

virtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

Definition at line 241 of file SelectBySASAOperation.cc.

References boundary_, core_, core_asa_, jump_nums_, mode_, probe_radius_, state_, surface_, surface_asa_, sym_dof_names_, and verbose_.

Member Data Documentation

bool protocols::toolbox::task_operations::SelectBySASAOperation::boundary_

private

Definition at line 60 of file SelectBySASAOperation.hh.

Referenced by apply(), parse_def(), and parse_tag().

bool protocols::toolbox::task_operations::SelectBySASAOperation::core_

private

Definition at line 59 of file SelectBySASAOperation.hh.

Referenced by apply(), parse_def(), and parse_tag().

core::Real protocols::toolbox::task_operations::SelectBySASAOperation::core_asa_

private

Definition at line 55 of file SelectBySASAOperation.hh.

Referenced by apply(), parse_def(), and parse_tag().

std::string protocols::toolbox::task_operations::SelectBySASAOperation::jump_nums_

private

Definition at line 57 of file SelectBySASAOperation.hh.

Referenced by apply(), parse_def(), and parse_tag().

std::string protocols::toolbox::task_operations::SelectBySASAOperation::mode_

private

Definition at line 52 of file SelectBySASAOperation.hh.

Referenced by apply(), parse_def(), and parse_tag().

core::Real protocols::toolbox::task_operations::SelectBySASAOperation::probe_radius_

private

Definition at line 54 of file SelectBySASAOperation.hh.

Referenced by apply(), parse_def(), and parse_tag().

std::string protocols::toolbox::task_operations::SelectBySASAOperation::state_

private

Definition at line 53 of file SelectBySASAOperation.hh.

Referenced by apply(), parse_def(), and parse_tag().

bool protocols::toolbox::task_operations::SelectBySASAOperation::surface_

private

Definition at line 61 of file SelectBySASAOperation.hh.

Referenced by apply(), parse_def(), and parse_tag().

core::Real protocols::toolbox::task_operations::SelectBySASAOperation::surface_asa_

private

Definition at line 56 of file SelectBySASAOperation.hh.

Referenced by apply(), parse_def(), and parse_tag().

std::string protocols::toolbox::task_operations::SelectBySASAOperation::sym_dof_names_

private

Definition at line 58 of file SelectBySASAOperation.hh.

Referenced by apply(), parse_def(), and parse_tag().

bool protocols::toolbox::task_operations::SelectBySASAOperation::verbose_

private

Definition at line 62 of file SelectBySASAOperation.hh.

Referenced by apply(), parse_def(), and parse_tag().

The documentation for this class was generated from the following files:

src/protocols/toolbox/task_operations/SelectBySASAOperation.hh
src/protocols/toolbox/task_operations/SelectBySASAOperation.cc