Rosetta 3.5: core::scoring::rna::Base_pair Class Reference

#include <RNA_BaseDoubletClasses.hh>

Collaboration diagram for core::scoring::rna::Base_pair:

Collaboration graph

Public Member Functions
	Base_pair ()

	Base_pair (Size const &res1_input, Size const res2_input, Size const &edge1_input, Size const edge2_input, Size const &orientation_input)

void	print_info (std::ostream &out=std::cout) const

Public Attributes
Size	res1

Size	res2

Size	edge1

Size	edge2

Size	orientation

Size	LW_orientation

Size	num_hbonds

Friends
bool	operator< (Base_pair const &lhs, Base_pair const &rhs)

bool	operator== (Base_pair const &lhs, Base_pair const &rhs)

std::ostream &	operator<< (std::ostream &out, Base_pair const &s)

Detailed Description

Definition at line 35 of file RNA_BaseDoubletClasses.hh.

Constructor & Destructor Documentation

core::scoring::rna::Base_pair::Base_pair ( )

inline

Definition at line 40 of file RNA_BaseDoubletClasses.hh.

core::scoring::rna::Base_pair::Base_pair	(	Size const &	res1_input,
		Size const	res2_input,
		Size const &	edge1_input,
		Size const	edge2_input,
		Size const &	orientation_input
	)

inline

Definition at line 51 of file RNA_BaseDoubletClasses.hh.

Member Function Documentation

void core::scoring::rna::Base_pair::print_info ( std::ostream & out = std::cout) const

inline

Definition at line 74 of file RNA_BaseDoubletClasses.hh.

References edge1, edge2, core::scoring::rna::get_full_edge_from_num(), core::scoring::rna::get_full_LW_orientation_from_num(), core::scoring::rna::get_full_orientation_from_num(), LW_orientation, num_hbonds, orientation, res1, and res2.

Friends And Related Function Documentation

bool operator<	(	Base_pair const &	lhs,
		Base_pair const &	rhs
	)

friend

Definition at line 86 of file RNA_BaseDoubletClasses.hh.

std::ostream& operator<<	(	std::ostream &	out,
		Base_pair const &	s
	)

friend

Definition at line 122 of file RNA_BaseDoubletClasses.hh.

bool operator==	(	Base_pair const &	lhs,
		Base_pair const &	rhs
	)

friend

Definition at line 110 of file RNA_BaseDoubletClasses.hh.

Member Data Documentation

Size core::scoring::rna::Base_pair::edge1

Definition at line 66 of file RNA_BaseDoubletClasses.hh.

Referenced by protocols::rna::RNA_DeNovoProtocol::add_number_native_base_pairs(), protocols::swa::RigidBodySampler::assign_WC_edges_to_base_pair12(), protocols::rna::check_base_pair(), protocols::rna::check_in_base_pair_list(), core::scoring::rna::RNA_FilteredBaseBaseInfo::figure_out_rna_base_pairs_to_score(), protocols::rna::get_base_pairing_info(), protocols::rna::get_base_pairing_list(), core::scoring::rna::RNA_FilteredBaseBaseInfo::get_data_score(), and print_info().

Size core::scoring::rna::Base_pair::edge2

Definition at line 67 of file RNA_BaseDoubletClasses.hh.

Referenced by protocols::rna::RNA_DeNovoProtocol::add_number_native_base_pairs(), protocols::swa::RigidBodySampler::assign_WC_edges_to_base_pair12(), protocols::rna::check_base_pair(), protocols::rna::check_in_base_pair_list(), core::scoring::rna::RNA_FilteredBaseBaseInfo::figure_out_rna_base_pairs_to_score(), protocols::rna::get_base_pairing_info(), protocols::rna::get_base_pairing_list(), core::scoring::rna::RNA_FilteredBaseBaseInfo::get_data_score(), and print_info().

Size core::scoring::rna::Base_pair::LW_orientation

Definition at line 69 of file RNA_BaseDoubletClasses.hh.

Referenced by print_info().

Size core::scoring::rna::Base_pair::num_hbonds

Definition at line 70 of file RNA_BaseDoubletClasses.hh.

Referenced by print_info().

Size core::scoring::rna::Base_pair::orientation

Definition at line 68 of file RNA_BaseDoubletClasses.hh.

Referenced by protocols::rna::RNA_DeNovoProtocol::add_number_native_base_pairs(), protocols::rna::check_base_pair(), protocols::rna::check_in_base_pair_list(), core::scoring::rna::RNA_FilteredBaseBaseInfo::figure_out_rna_base_pairs_to_score(), protocols::rna::get_base_pairing_info(), protocols::rna::get_base_pairing_list(), and print_info().

Size core::scoring::rna::Base_pair::res1

Definition at line 62 of file RNA_BaseDoubletClasses.hh.

Referenced by protocols::rna::RNA_DeNovoProtocol::add_number_native_base_pairs(), protocols::swa::RigidBodySampler::assign_WC_edges_to_base_pair12(), protocols::rna::check_base_pair(), protocols::rna::check_in_base_pair_list(), core::scoring::rna::RNA_FilteredBaseBaseInfo::figure_out_rna_base_pairs_to_score(), protocols::rna::get_base_pairing_info(), protocols::rna::get_base_pairing_list(), core::scoring::rna::RNA_FilteredBaseBaseInfo::get_data_score(), and print_info().

Size core::scoring::rna::Base_pair::res2

Definition at line 65 of file RNA_BaseDoubletClasses.hh.

Referenced by protocols::rna::RNA_DeNovoProtocol::add_number_native_base_pairs(), protocols::swa::RigidBodySampler::assign_WC_edges_to_base_pair12(), protocols::rna::check_base_pair(), protocols::rna::check_in_base_pair_list(), core::scoring::rna::RNA_FilteredBaseBaseInfo::figure_out_rna_base_pairs_to_score(), protocols::rna::get_base_pairing_info(), protocols::rna::get_base_pairing_list(), core::scoring::rna::RNA_FilteredBaseBaseInfo::get_data_score(), and print_info().

The documentation for this class was generated from the following file:

src/core/scoring/rna/RNA_BaseDoubletClasses.hh