core::pack::task::operation::NoRepackDisulfides Class Reference

prevent disulfides from being repacked; assume disulfides info in Pose is up-to-date More...

#include <NoRepackDisulfides.hh>

Inheritance diagram for core::pack::task::operation::NoRepackDisulfides:

Collaboration diagram for core::pack::task::operation::NoRepackDisulfides:

Public Types
typedef core::pack::task::PackerTask	PackerTask
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef core::pose::Pose	Pose
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr
typedef pose::Pose	Pose

Public Member Functions
	NoRepackDisulfides ()
	default constructor More...
	NoRepackDisulfides (NoRepackDisulfides const &rval)
	copy constructor More...
virtual	~NoRepackDisulfides ()
	default destructor More...
virtual TaskOperationOP	clone () const
	clone this object More...
virtual void	apply (Pose const &pose, PackerTask &task) const
	apply operations to PackerTask More...
Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()
virtual void	parse_tag (TagPtr)
	Used to parse an xml-like tag to load parameters and properties. More...
virtual void	parse_def (utility::lua::LuaObject const &def)

Private Types
typedef core::pack::task::operation::TaskOperation	Super

Detailed Description

prevent disulfides from being repacked; assume disulfides info in Pose is up-to-date

Definition at line 36 of file NoRepackDisulfides.hh.

Member Typedef Documentation

typedef core::pack::task::PackerTask core::pack::task::operation::NoRepackDisulfides::PackerTask

Definition at line 48 of file NoRepackDisulfides.hh.

typedef core::pose::Pose core::pack::task::operation::NoRepackDisulfides::Pose

Definition at line 50 of file NoRepackDisulfides.hh.

typedef core::pack::task::operation::TaskOperation core::pack::task::operation::NoRepackDisulfides::Super

private

Definition at line 42 of file NoRepackDisulfides.hh.

typedef core::pack::task::operation::TaskOperationOP core::pack::task::operation::NoRepackDisulfides::TaskOperationOP

Definition at line 49 of file NoRepackDisulfides.hh.

Constructor & Destructor Documentation

core::pack::task::operation::NoRepackDisulfides::NoRepackDisulfides

(

)

default constructor

Definition at line 46 of file NoRepackDisulfides.cc.

Referenced by clone().

core::pack::task::operation::NoRepackDisulfides::NoRepackDisulfides

(

NoRepackDisulfides const &

rval)

copy constructor

Definition at line 52 of file NoRepackDisulfides.cc.

core::pack::task::operation::NoRepackDisulfides::~NoRepackDisulfides ( )

virtual

default destructor

Definition at line 58 of file NoRepackDisulfides.cc.

Member Function Documentation

void core::pack::task::operation::NoRepackDisulfides::apply ( Pose const &  pose, PackerTask &  task  ) const

virtual

apply operations to PackerTask

Implements core::pack::task::operation::TaskOperation.

Definition at line 71 of file NoRepackDisulfides.cc.

References core::conformation::Residue::aa(), core::chemical::aa_cys, core::conformation::Residue::atom_index(), core::chemical::DISULFIDE, core::chemical::ResidueType::has_atom_name(), core::conformation::Residue::has_variant_type(), core::pose::symmetry::is_symmetric(), core::pack::task::PackerTask::nonconst_residue_task(), core::pack::task::ResidueLevelTask::prevent_repacking(), core::pose::Pose::residue(), core::chemical::ResidueType::residue_connection_id_for_atom(), core::conformation::Residue::residue_connection_partner(), core::pose::symmetry::symmetry_info(), core::pose::Pose::total_residue(), and core::conformation::Residue::type().

Referenced by protocols::toolbox::task_operations::ProteinInterfaceDesignOperation::apply(), protocols::simple_moves::ddG::calculate(), protocols::flexpep_docking::FlexPepDockingProtocol::prepack_only(), and protocols::simple_moves::ddG::symm_ddG().

NoRepackDisulfides::TaskOperationOP core::pack::task::operation::NoRepackDisulfides::clone ( ) const

virtual

clone this object

Implements core::pack::task::operation::TaskOperation.

Definition at line 66 of file NoRepackDisulfides.cc.

References NoRepackDisulfides().

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The documentation for this class was generated from the following files:

• src/core/pack/task/operation/NoRepackDisulfides.hh
• src/core/pack/task/operation/NoRepackDisulfides.cc