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core::conformation::symmetry::SymDof Class Reference

#include <SymDof.hh>

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Public Member Functions

 SymDof ()
 constructor More...
 
 SymDof (SymDof const &src)
 copy constructor More...
 
SymDof & operator= (SymDof const &src)
 
 ~SymDof ()
 
void add_dof_from_string (utility::vector1< std::string > dof_string)
 
void read (std::string dof_line)
 
bool allow_dof (int df) const
 
bool has_dof ()
 
core::Real range1_lower (int df) const
 
core::Real range1_upper (int df) const
 
core::Real range2_lower (int df) const
 
core::Real range2_upper (int df) const
 
bool has_range1 (int df) const
 
bool has_range2 (int df) const
 
bool has_range1_lower (int df) const
 
bool has_range1_upper (int df) const
 
bool has_range2_lower (int df) const
 
bool has_range2_upper (int df) const
 
int jump_direction (int df) const
 

Private Attributes

utility::vector1< bool > allowed_dof_jumps_
 
utility::vector1< Real > lower_range_dof_jumps1_
 
utility::vector1< Real > upper_range_dof_jumps1_
 
utility::vector1< Real > lower_range_dof_jumps2_
 
utility::vector1< Real > upper_range_dof_jumps2_
 
utility::vector1< bool > has_range1_lower_
 
utility::vector1< bool > has_range1_upper_
 
utility::vector1< bool > has_range2_lower_
 
utility::vector1< bool > has_range2_upper_
 
utility::vector1< int > jump_dir_
 

Friends

std::ostream & operator<< (std::ostream &s, const SymDof &dof)
 
bool operator== (SymDof const &a, SymDof const &b)
 
bool operator!= (SymDof const &a, SymDof const &b)
 

Detailed Description

Definition at line 46 of file SymDof.hh.

Constructor & Destructor Documentation

core::conformation::symmetry::SymDof::SymDof ( )

constructor

Definition at line 32 of file SymDof.cc.

References allowed_dof_jumps_, has_range1_lower_, has_range1_upper_, has_range2_lower_, has_range2_upper_, jump_dir_, lower_range_dof_jumps1_, lower_range_dof_jumps2_, upper_range_dof_jumps1_, and upper_range_dof_jumps2_.

core::conformation::symmetry::SymDof::SymDof ( SymDof const &  src)

copy constructor

Definition at line 49 of file SymDof.cc.

References allowed_dof_jumps_, has_range1_lower_, has_range1_upper_, has_range2_lower_, has_range2_upper_, jump_dir_, lower_range_dof_jumps1_, lower_range_dof_jumps2_, upper_range_dof_jumps1_, and upper_range_dof_jumps2_.

core::conformation::symmetry::SymDof::~SymDof ( )

Definition at line 80 of file SymDof.cc.

Member Function Documentation

void core::conformation::symmetry::SymDof::add_dof_from_string ( utility::vector1< std::string >  dof_string)

Definition at line 292 of file SymDof.cc.

References read().

Referenced by core::conformation::symmetry::SymmData::read_symmetry_data_from_stream().

bool core::conformation::symmetry::SymDof::allow_dof ( int  df) const

Definition at line 84 of file SymDof.cc.

References allowed_dof_jumps_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply(), protocols::rigid::RigidBodyDofPerturbMover::apply(), has_dof(), core::pose::symmetry::make_symmetric_movemap(), core::conformation::symmetry::operator<<(), protocols::rigid::RigidBodyDofRandomTransMover::RigidBodyDofRandomTransMover(), protocols::rigid::RigidBodyDofSeqTransMover::RigidBodyDofSeqTransMover(), protocols::rigid::RigidBodyDofTransMover::RigidBodyDofTransMover(), protocols::simple_moves::symmetry::SymmetrySlider::setup(), and core::conformation::symmetry::SymmData::show().

bool core::conformation::symmetry::SymDof::has_dof ( )

Definition at line 93 of file SymDof.cc.

References allow_dof(), core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

bool core::conformation::symmetry::SymDof::has_range1 ( int  df) const

Definition at line 139 of file SymDof.cc.

References has_range1_lower_, and has_range1_upper_.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply().

bool core::conformation::symmetry::SymDof::has_range1_lower ( int  df) const

Definition at line 155 of file SymDof.cc.

References has_range1_lower_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply().

bool core::conformation::symmetry::SymDof::has_range1_upper ( int  df) const

Definition at line 163 of file SymDof.cc.

References has_range1_upper_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

bool core::conformation::symmetry::SymDof::has_range2 ( int  df) const

Definition at line 147 of file SymDof.cc.

References has_range2_lower_, and has_range2_upper_.

bool core::conformation::symmetry::SymDof::has_range2_lower ( int  df) const

Definition at line 171 of file SymDof.cc.

References has_range2_lower_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofPerturbMover::apply().

bool core::conformation::symmetry::SymDof::has_range2_upper ( int  df) const

Definition at line 179 of file SymDof.cc.

References has_range2_upper_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

int core::conformation::symmetry::SymDof::jump_direction ( int  df) const

Definition at line 188 of file SymDof.cc.

References jump_dir_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply(), protocols::rigid::RigidBodyDofPerturbMover::apply(), core::conformation::symmetry::operator<<(), protocols::rigid::RigidBodyDofTransMover::RigidBodyDofTransMover(), and core::conformation::symmetry::SymmData::show().

SymDof & core::conformation::symmetry::SymDof::operator= ( SymDof const &  src)

Definition at line 64 of file SymDof.cc.

References allowed_dof_jumps_, has_range1_lower_, has_range1_upper_, has_range2_lower_, has_range2_upper_, jump_dir_, lower_range_dof_jumps1_, lower_range_dof_jumps2_, upper_range_dof_jumps1_, and upper_range_dof_jumps2_.

core::Real core::conformation::symmetry::SymDof::range1_lower ( int  df) const

Definition at line 103 of file SymDof.cc.

References lower_range_dof_jumps1_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply(), core::conformation::symmetry::operator<<(), and core::conformation::symmetry::SymmData::show().

core::Real core::conformation::symmetry::SymDof::range1_upper ( int  df) const

Definition at line 112 of file SymDof.cc.

References upper_range_dof_jumps1_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofRandomizeMover::apply(), core::conformation::symmetry::operator<<(), and core::conformation::symmetry::SymmData::show().

core::Real core::conformation::symmetry::SymDof::range2_lower ( int  df) const

Definition at line 121 of file SymDof.cc.

References lower_range_dof_jumps2_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by protocols::rigid::RigidBodyDofPerturbMover::apply(), core::conformation::symmetry::operator<<(), and core::conformation::symmetry::SymmData::show().

core::Real core::conformation::symmetry::SymDof::range2_upper ( int  df) const

Definition at line 130 of file SymDof.cc.

References upper_range_dof_jumps2_, core::conformation::symmetry::X_DOF, and core::conformation::symmetry::Z_ANGLE_DOF.

Referenced by core::conformation::symmetry::operator<<(), and core::conformation::symmetry::SymmData::show().

void core::conformation::symmetry::SymDof::read ( std::string  dof_line)

Definition at line 200 of file SymDof.cc.

References allowed_dof_jumps_, has_range1_lower_, has_range1_upper_, has_range2_lower_, has_range2_upper_, jump_dir_, lower_range_dof_jumps1_, lower_range_dof_jumps2_, protocols::forge::methods::replace(), core::io::pdb::split(), upper_range_dof_jumps1_, upper_range_dof_jumps2_, core::conformation::symmetry::X_ANGLE_DOF, core::conformation::symmetry::X_DOF, core::conformation::symmetry::Y_ANGLE_DOF, core::conformation::symmetry::Y_DOF, core::conformation::symmetry::Z_ANGLE_DOF, and core::conformation::symmetry::Z_DOF.

Referenced by add_dof_from_string().

Friends And Related Function Documentation

bool operator!= ( SymDof const &  a,
SymDof const &  b 
)
friend

Definition at line 320 of file SymDof.cc.

std::ostream& operator<< ( std::ostream &  s,
const SymDof &  dof 
)
friend

Definition at line 270 of file SymDof.cc.

bool operator== ( SymDof const &  a,
SymDof const &  b 
)
friend

Definition at line 302 of file SymDof.cc.

Member Data Documentation

utility::vector1< bool > core::conformation::symmetry::SymDof::allowed_dof_jumps_
private

Definition at line 147 of file SymDof.hh.

Referenced by allow_dof(), operator=(), core::conformation::symmetry::operator==(), read(), and SymDof().

utility::vector1< bool > core::conformation::symmetry::SymDof::has_range1_lower_
private

Definition at line 152 of file SymDof.hh.

Referenced by has_range1(), has_range1_lower(), operator=(), core::conformation::symmetry::operator==(), read(), and SymDof().

utility::vector1< bool > core::conformation::symmetry::SymDof::has_range1_upper_
private

Definition at line 153 of file SymDof.hh.

Referenced by has_range1(), has_range1_upper(), operator=(), core::conformation::symmetry::operator==(), read(), and SymDof().

utility::vector1< bool > core::conformation::symmetry::SymDof::has_range2_lower_
private

Definition at line 154 of file SymDof.hh.

Referenced by has_range2(), has_range2_lower(), operator=(), core::conformation::symmetry::operator==(), read(), and SymDof().

utility::vector1< bool > core::conformation::symmetry::SymDof::has_range2_upper_
private

Definition at line 155 of file SymDof.hh.

Referenced by has_range2(), has_range2_upper(), operator=(), core::conformation::symmetry::operator==(), read(), and SymDof().

utility::vector1< int > core::conformation::symmetry::SymDof::jump_dir_
private

Definition at line 156 of file SymDof.hh.

Referenced by jump_direction(), operator=(), core::conformation::symmetry::operator==(), read(), and SymDof().

utility::vector1< Real > core::conformation::symmetry::SymDof::lower_range_dof_jumps1_
private

Definition at line 148 of file SymDof.hh.

Referenced by operator=(), core::conformation::symmetry::operator==(), range1_lower(), read(), and SymDof().

utility::vector1< Real > core::conformation::symmetry::SymDof::lower_range_dof_jumps2_
private

Definition at line 150 of file SymDof.hh.

Referenced by operator=(), core::conformation::symmetry::operator==(), range2_lower(), read(), and SymDof().

utility::vector1< Real > core::conformation::symmetry::SymDof::upper_range_dof_jumps1_
private

Definition at line 149 of file SymDof.hh.

Referenced by operator=(), core::conformation::symmetry::operator==(), range1_upper(), read(), and SymDof().

utility::vector1< Real > core::conformation::symmetry::SymDof::upper_range_dof_jumps2_
private

Definition at line 151 of file SymDof.hh.

Referenced by operator=(), core::conformation::symmetry::operator==(), range2_upper(), read(), and SymDof().

The documentation for this class was generated from the following files:
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