#include <PDBPoseInputStream.hh>

Inheritance diagram for core::import_pose::pose_stream::PDBPoseInputStream:

Collaboration diagram for core::import_pose::pose_stream::PDBPoseInputStream:

Public Member Functions
	PDBPoseInputStream ()

	PDBPoseInputStream (utility::vector1< utility::file::FileName > fns)

	PDBPoseInputStream (utility::file::FileName const &fn)

	PDBPoseInputStream (utility::vector1< utility::file::FileName > fns, utility::vector1< utility::file::FileName > list_fns)

	~PDBPoseInputStream ()

void	set_filenames (utility::vector1< utility::file::FileName > filenames)

utility::vector1 < utility::file::FileName >	get_filenames ()

virtual bool	has_another_pose ()

virtual void	reset ()

virtual void	fill_pose (core::pose::Pose &pose, core::chemical::ResidueTypeSet const &residue_set)

virtual void	fill_pose (core::pose::Pose &)

virtual utility::vector1 < core::pose::Pose >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)

void	add_list_filenames (utility::vector1< utility::file::FileName > list_fns)
	adds a list of files each containing lists of PDBs More...

Public Member Functions inherited from core::import_pose::pose_stream::PoseInputStream
	PoseInputStream ()

virtual	~PoseInputStream ()

void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Private Attributes
utility::vector1 < utility::file::FileName >	filenames_

utility::vector1 < utility::file::FileName > ::const_iterator	current_position_

Detailed Description

Definition at line 34 of file PDBPoseInputStream.hh.

Constructor & Destructor Documentation

core::import_pose::pose_stream::PDBPoseInputStream::PDBPoseInputStream ( )

inline

Definition at line 37 of file PDBPoseInputStream.hh.

core::import_pose::pose_stream::PDBPoseInputStream::PDBPoseInputStream ( utility::vector1< utility::file::FileName > fns)

inline

Definition at line 39 of file PDBPoseInputStream.hh.

References set_filenames().

core::import_pose::pose_stream::PDBPoseInputStream::PDBPoseInputStream ( utility::file::FileName const & fn)

inline

Definition at line 45 of file PDBPoseInputStream.hh.

References set_filenames().

core::import_pose::pose_stream::PDBPoseInputStream::PDBPoseInputStream	(	utility::vector1< utility::file::FileName >	fns,
		utility::vector1< utility::file::FileName >	list_fns
	)

inline

Definition at line 51 of file PDBPoseInputStream.hh.

References add_list_filenames(), and set_filenames().

core::import_pose::pose_stream::PDBPoseInputStream::~PDBPoseInputStream ( )

inline

Definition at line 59 of file PDBPoseInputStream.hh.

Member Function Documentation

void core::import_pose::pose_stream::PDBPoseInputStream::add_list_filenames ( utility::vector1< utility::file::FileName > list_fns)

adds a list of files each containing lists of PDBs

Definition at line 124 of file PDBPoseInputStream.cc.

References current_position_, protocols::abinitio::filename(), and filenames_.

Referenced by PDBPoseInputStream().

void core::import_pose::pose_stream::PDBPoseInputStream::fill_pose	(	core::pose::Pose &	pose,
		core::chemical::ResidueTypeSet const &	residue_set
	)

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

Definition at line 67 of file PDBPoseInputStream.cc.

References current_position_, core::pose::Pose::data(), has_another_pose(), core::pose::datacache::CacheableDataType::JOBDIST_OUTPUT_TAG, core::import_pose::pose_from_pdb(), and core::import_pose::pose_stream::PoseInputStream::preprocess_pose().

Referenced by get_all_poses().

void core::import_pose::pose_stream::PDBPoseInputStream::fill_pose ( core::pose::Pose & pose)

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

Definition at line 88 of file PDBPoseInputStream.cc.

References current_position_, core::pose::Pose::data(), has_another_pose(), core::pose::datacache::CacheableDataType::JOBDIST_OUTPUT_TAG, core::import_pose::pose_from_pdb(), and core::import_pose::pose_stream::PoseInputStream::preprocess_pose().

utility::vector1< core::pose::Pose > core::import_pose::pose_stream::PDBPoseInputStream::get_all_poses ( core::chemical::ResidueTypeSet const & residue_set)

virtual

Reimplemented from core::import_pose::pose_stream::PoseInputStream.

Definition at line 108 of file PDBPoseInputStream.cc.

References filenames_, fill_pose(), and has_another_pose().

utility::vector1< utility::file::FileName > core::import_pose::pose_stream::PDBPoseInputStream::get_filenames ( )

Definition at line 55 of file PDBPoseInputStream.cc.

References filenames_.

bool core::import_pose::pose_stream::PDBPoseInputStream::has_another_pose ( )

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

Definition at line 59 of file PDBPoseInputStream.cc.

References current_position_, and filenames_.