protocols::frag_picker::quota::QuotaSelector Class Reference

selects a given number of fragments using a quota scheme More...

#include <QuotaSelector.hh>

Inheritance diagram for protocols::frag_picker::quota::QuotaSelector:

Collaboration diagram for protocols::frag_picker::quota::QuotaSelector:

Public Member Functions
	QuotaSelector (Size, Size, QuotaCollectorOP)
	Constructor sets the desired number of fragments. More...
virtual	~QuotaSelector ()
virtual void	select_fragments (ScoredCandidatesVector1 const &in, ScoredCandidatesVector1 &out)
	Selects desired number of fragments from a given candidates. More...
Public Member Functions inherited from protocols::frag_picker::FragmentSelectingRule
	FragmentSelectingRule (Size frags_per_pos)
	Constructor sets the desired number of fragments. More...
Size	frags_per_pos ()
	Says how many fragments will be selected for each position in a query sequence. More...
virtual	~FragmentSelectingRule ()

Protected Member Functions
Size	round (Real x)
Size	next_from_pool (ScoredCandidatesVector1 const &, Size recently_taken, std::set< Size > &in_use)
void	push_the_limits (utility::vector1< Size > &q_limits, Size target_total)
void	push_the_limits_to_the_winner (utility::vector1< Size > &q_limits, Size target_total)
void	push_the_limits (utility::vector1< Size > &, Size, utility::vector1< Real > &)
virtual void	select_fragments_200 (ScoredCandidatesVector1 const &in, ScoredCandidatesVector1 &out)
virtual void	select_fragments_25_200 (ScoredCandidatesVector1 const &in, ScoredCandidatesVector1 &out)

Protected Attributes
QuotaCollectorOP	collector_
Size	q_pos_

Private Attributes
utility::vector1< std::string >	tags_
std::map< std::string, Size >	tag_map_

Detailed Description

selects a given number of fragments using a quota scheme

Definition at line 42 of file QuotaSelector.hh.

Constructor & Destructor Documentation

protocols::frag_picker::quota::QuotaSelector::QuotaSelector	(	Size	frags_per_pos,
		Size	pos_in_query,
		QuotaCollectorOP	collector
	)

Constructor sets the desired number of fragments.

Definition at line 41 of file QuotaSelector.cc.

References collector_, q_pos_, and protocols::frag_picker::quota::trQuotaSelector().

virtual protocols::frag_picker::quota::QuotaSelector::~QuotaSelector ( )

inlinevirtual

Definition at line 48 of file QuotaSelector.hh.

Member Function Documentation

Size protocols::frag_picker::quota::QuotaSelector::next_from_pool ( ScoredCandidatesVector1 const &  pool, Size  recently_taken, std::set< Size > &  in_use  )

protected

Definition at line 50 of file QuotaSelector.cc.

References protocols::frag_picker::quota::trQuotaSelector().

Referenced by select_fragments_200(), and select_fragments_25_200().

void protocols::frag_picker::quota::QuotaSelector::push_the_limits ( utility::vector1< Size > &  q_limits, Size  target_total  )

protected

Definition at line 85 of file QuotaSelector.cc.

References protocols::frag_picker::quota::mysorter_biggest_first, and protocols::frag_picker::quota::trQuotaSelector().

Referenced by select_fragments_200(), and select_fragments_25_200().

void protocols::frag_picker::quota::QuotaSelector::push_the_limits ( utility::vector1< Size > &  q_limits, Size  target_total, utility::vector1< Real > &  q_fractions  )

protected

Definition at line 123 of file QuotaSelector.cc.

References protocols::frag_picker::quota::mysorter_missing_fraction_biggest_first, and protocols::frag_picker::quota::trQuotaSelector().

void protocols::frag_picker::quota::QuotaSelector::push_the_limits_to_the_winner ( utility::vector1< Size > &  q_limits, Size  target_total  )

protected

Definition at line 108 of file QuotaSelector.cc.

References protocols::frag_picker::quota::mysorter_biggest_first, and protocols::frag_picker::quota::trQuotaSelector().

Size protocols::frag_picker::quota::QuotaSelector::round ( Real  x)

inlineprotected

Definition at line 62 of file QuotaSelector.hh.

virtual void protocols::frag_picker::quota::QuotaSelector::select_fragments ( ScoredCandidatesVector1 const &  in, ScoredCandidatesVector1 &  out  )

inlinevirtual

Selects desired number of fragments from a given candidates.

Implements protocols::frag_picker::FragmentSelectingRule.

Definition at line 52 of file QuotaSelector.hh.

References select_fragments_25_200().

Referenced by protocols::frag_picker::FragmentPicker::quota_protocol().

void protocols::frag_picker::quota::QuotaSelector::select_fragments_200 ( ScoredCandidatesVector1 const &  in, ScoredCandidatesVector1 &  out  )

protectedvirtual

Definition at line 153 of file QuotaSelector.cc.

References collector_, protocols::frag_picker::FragmentSelectingRule::frags_per_pos(), next_from_pool(), push_the_limits(), q_pos_, and protocols::frag_picker::quota::trQuotaSelector().

void protocols::frag_picker::quota::QuotaSelector::select_fragments_25_200 ( ScoredCandidatesVector1 const &  in, ScoredCandidatesVector1 &  out  )

protectedvirtual

Definition at line 197 of file QuotaSelector.cc.

References collector_, protocols::frag_picker::FragmentSelectingRule::frags_per_pos(), protocols::frag_picker::QuotaDebug::log(), protocols::frag_picker::FragmentPicker::log_200_, protocols::frag_picker::FragmentPicker::log_25_, next_from_pool(), push_the_limits(), q_pos_, protocols::frag_picker::QuotaDebug::tag_map_, and protocols::frag_picker::quota::trQuotaSelector().

Referenced by select_fragments().

Member Data Documentation

QuotaCollectorOP protocols::frag_picker::quota::QuotaSelector::collector_

protected

Definition at line 60 of file QuotaSelector.hh.

Referenced by QuotaSelector(), select_fragments_200(), and select_fragments_25_200().

Size protocols::frag_picker::quota::QuotaSelector::q_pos_

protected

Definition at line 61 of file QuotaSelector.hh.

Referenced by QuotaSelector(), select_fragments_200(), and select_fragments_25_200().

std::map<std::string,Size> protocols::frag_picker::quota::QuotaSelector::tag_map_

private

Definition at line 85 of file QuotaSelector.hh.

utility::vector1<std::string> protocols::frag_picker::quota::QuotaSelector::tags_

private

Definition at line 84 of file QuotaSelector.hh.

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/quota/QuotaSelector.hh
• src/protocols/frag_picker/quota/QuotaSelector.cc