#include <Align_RmsdEvaluator.hh>

Inheritance diagram for protocols::comparative_modeling::Align_RmsdEvaluator:

Collaboration diagram for protocols::comparative_modeling::Align_RmsdEvaluator:

Public Member Functions
	Align_RmsdEvaluator (core::pose::PoseCOP native_pose, std::string tag="", bool calc_gdt=true, core::sequence::SequenceAlignmentOP aln=0)

	~Align_RmsdEvaluator ()

virtual void	apply (core::pose::Pose &pose, std::string tag, core::io::silent::SilentStruct &ss) const
	evaluate pose and store values in Silent_Struct why is this specific to a specific type of SilentStruct? that seems needlessly pointless and overly constraining. More...

virtual core::Real	apply (core::pose::Pose &) const
	outdated method - don't use! More...

void	report_gdt_components (bool const setting)

bool	report_gdt_components () const

void	calc_gdt (bool const setting)

bool	calc_gdt () const

Public Member Functions inherited from protocols::evaluation::AlignEvaluator
	AlignEvaluator (core::pose::PoseCOP native_pose, std::string tag="", bool report_aln_components=true, core::sequence::SequenceAlignmentOP aln=0)

	~AlignEvaluator ()

core::sequence::SequenceAlignmentOP	get_alignment (core::pose::Pose const &pose) const

void	report_aln_components (bool const setting)

bool	report_aln_components () const

std::string	tag () const

core::pose::PoseCOP	native_pose () const

Public Member Functions inherited from protocols::evaluation::SingleValuePoseEvaluator< core::Real >
	SingleValuePoseEvaluator (std::string name)

virtual bool	applicable (core::pose::Pose const &) const

virtual core::Size	size () const

virtual std::string	name (core::Size) const

Public Member Functions inherited from protocols::evaluation::PoseEvaluator
	PoseEvaluator ()

virtual	~PoseEvaluator ()

virtual void	apply (core::io::silent::SilentStruct &pss) const
	direct application to SilentStruct... default implementation makes pose and calls "apply", you can overload if you don't need the pose-step More...

Private Attributes
bool	calc_gdt_

bool	report_gdt_components_

Detailed Description

Definition at line 35 of file Align_RmsdEvaluator.hh.

Constructor & Destructor Documentation

protocols::comparative_modeling::Align_RmsdEvaluator::Align_RmsdEvaluator	(	core::pose::PoseCOP	native_pose,
		std::string	tag = `""`,
		bool	calc_gdt = `true`,
		core::sequence::SequenceAlignmentOP	aln = `0`
	)

Definition at line 46 of file Align_RmsdEvaluator.cc.

protocols::comparative_modeling::Align_RmsdEvaluator::~Align_RmsdEvaluator ( )

Definition at line 44 of file Align_RmsdEvaluator.cc.

Member Function Documentation

void protocols::comparative_modeling::Align_RmsdEvaluator::apply	(	core::pose::Pose &	,
		std::string	tag,
		core::io::silent::SilentStruct &	pss
	)		const

virtual

evaluate pose and store values in Silent_Struct why is this specific to a specific type of SilentStruct? that seems needlessly pointless and overly constraining.

Implements protocols::evaluation::AlignEvaluator.

Definition at line 58 of file Align_RmsdEvaluator.cc.

References core::io::silent::SilentStruct::add_energy(), calc_gdt(), protocols::comparative_modeling::gather_coords(), core::scoring::gdtha(), core::scoring::gdtsc(), protocols::evaluation::AlignEvaluator::get_alignment(), protocols::evaluation::AlignEvaluator::native_pose(), protocols::evaluation::AlignEvaluator::report_aln_components(), report_gdt_components(), core::id::SequenceMapping::size1(), protocols::evaluation::AlignEvaluator::tag(), protocols::comparative_modeling::tr(), core::scoring::xyz_gdtmm(), and core::scoring::xyz_maxsub().